Microbacterium testaceum: MTES_3162
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Entry
MTES_3162 CDS
T01423
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mts
Microbacterium testaceum
Pathway
mts03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mts00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MTES_3162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mts03400
]
MTES_3162
Enzymes [BR:
mts01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MTES_3162
DNA repair and recombination proteins [BR:
mts03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MTES_3162
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BAJ76126
UniProt:
E8NC83
LinkDB
All DBs
Position
complement(3431222..3433699)
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AA seq
825 aa
AA seq
DB search
MVEQTVQIGGRRLRLSNLDKVLYPETGTTKGEVIDYYSRVAARLLPHVADRPVTRKRWPD
GVGTADAPGEPFFAKALEPGAPAWVRRFPIDHSSGAKDYPLVDDLPTLVSLAQVASLELH
VPQWRFSPDGERQNPDRLVLDLDPGPGVGLVECAEVARWARAILRDIGLDPLPVTSGSKG
IHLYAHLDGKQSSEAASAIAKELARAIEADHPDLVVSQMSKAARPGKVFIDWSQNNGSKT
TIAPYSLRGRAQPTVAAPRTWEELDDPALRHLLFTDVLERTGDPLAAVERETGPLRAYIS
KRTAGRTPEPVPEAPHGEPAPEGLPRFVIQEHHASRLHWDLRLEHGGVLVSWAVPKGIPS
TTAKNSLAVMTEDHPMQYLDFTGEIPRGEYGAGIMTVWDTGTYELEKWRDDEVIATLQGR
DDGPLGRVRVALIRTEGRGEKSQWLLHRMKTDAEGRPQADGAPVVALDHGRVGRDPEPRG
AAAGHADGDVDAPDGSRRGAPSPADVRPMLATSATPGLARAAAGRWGQAWVEMKWDGIRG
IGLWDGRRLRLRSRNGNDLTAAYPELTTVDLGLGPEPAIIDGEIVALDPQGRPSFPLLQK
RMNLAQPREIEREARRTPVHLYLFDVLSVGDRDVSPLPLAERRGILESLAQKATAPVVIP
PVFDDVDAAVATSGRFGLEGVVVKDPRSPYRRGERSEQWLKVKHSRTQEVVVGGVRPGKG
NRAGTIGSLLVGVPDPDGLRYAGRVGSGFSEQTLARLSELLAPLGSDADPFVGVPAADAR
DAIWVRPELVAEVEFAEFTPDGILRQARWRGLRPDKDPSEVVREG
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atggtggagcagacggtgcagatcggcggtcgtcgactgcggctgtccaatctcgacaaa
gtcctgtaccccgagaccgggaccaccaagggcgaggtgatcgactactactcccgcgtc
gcggcgcgtcttctcccccacgtcgccgaccgccccgtcacgcgcaaacggtggcccgac
ggcgtcgggaccgcggatgccccgggtgaaccgttcttcgccaaggctctggagccgggc
gctcccgcgtgggtgcgccgcttcccgatcgatcactcgtcgggggcgaaggactacccg
ctcgtcgacgaccttcccacgctcgtctccctcgcgcaggtcgcgagcctcgaactgcac
gtcccgcagtggcggttctcgcccgacggcgagcgacagaaccccgaccgtctcgtgctc
gatctcgaccccggtcccggcgtgggactcgtcgagtgcgccgaggtcgcccggtgggcg
cgggcgatcctccgtgacatcggcctcgaccccctccccgtcaccagcggcagcaagggc
atccacctctacgcgcatctcgacgggaagcagtcgagcgaagccgccagcgcgatcgcg
aaggagttggcgcgcgcgatcgaggccgaccaccccgacctcgtcgtcagccagatgtcc
aaagccgcgcgtccgggcaaggtcttcatcgactggagccagaacaacggctcgaagacc
acgatcgcgccgtactcgctgcgcgggcgggcgcagccgacggtcgcggctccccgcaca
tgggaggagctcgacgaccccgccctccgtcacctgctcttcaccgacgtgctcgagcgc
acgggcgaccccctcgccgcggtcgaacgcgagaccgggcccctgcgcgcgtacatctcg
aagcgcaccgccggccgcacgcccgaacccgtgcccgaagcaccgcacggcgagcccgcg
cccgagggcctcccccgcttcgtgatccaggagcaccacgcgtcccgcctgcactgggat
ctgcgcctcgaacacgggggcgtgctcgtcagctgggcggtgcccaaaggcatcccctcg
acgacagccaagaacagcctcgcggtcatgaccgaggaccacccgatgcaatacctcgac
ttcaccggcgagattccgcgcggagaatacggcgcgggcatcatgactgtctgggacacg
ggcacgtacgagctcgagaaatggcgcgacgacgaggtgatcgcgacgctccaggggcgc
gacgacggcccgctcgggcgcgtgcgcgtcgcgctgatccgcacggagggccgcggcgag
aagtcccagtggctgctgcaccggatgaagacggatgctgagggccgcccgcaggcagac
ggcgcgcccgtcgtggcgctcgatcacggtcgagtcgggcgcgatccggaacctcgcggt
gccgccgctgggcacgccgacggcgatgtggacgcgccggacggttcccgccgcggcgcc
ccttcccccgccgacgtacgccccatgctcgcgacgtccgccacgccggggctggcgcgc
gcagccgccgggcggtggggacaggcgtgggtggagatgaagtgggacggcatccgtggg
atcggactgtgggacggccggcgcctacgcctgcgttcgcgcaacggcaacgacctcacc
gcggcgtatcccgagctcacgacggtcgacctcggtctcggccccgagcccgcgatcatc
gacggcgagatcgtcgccctcgatccgcagggacggccgagcttcccgctgctgcagaag
aggatgaacctggcccagccccgcgagatcgagcgggaagcccgccgcacccccgtgcac
ctgtacctgttcgatgtcctcagcgtgggagaccgcgacgtctcgcccctccccctcgcc
gagcgccgcggcatcctggagtccctcgctcagaaggccacggcccccgtcgtcattcca
cccgtgttcgacgacgtggatgccgccgtcgccacgagcggtcgattcgggctcgagggg
gtcgtcgtgaaggacccgcgttctccctaccgccgcggcgagcggtcggaacagtggctg
aaggtcaagcattcgcgcacgcaggaggtcgtcgtcggcggtgtgcgcccggggaagggc
aaccgtgcgggcacgatcgggtcgctgctcgtgggcgtgcccgacccggacggactgcgc
tacgccggccgcgtcggctcgggcttctcggagcagacgctggcgcgcttgagcgagctc
ctcgcgccgctcggcagcgacgcggatccgttcgtcggcgttccggcggccgacgcccgc
gacgcgatctgggtgcgccccgagctcgtcgccgaggtggagttcgcggagttcacgccg
gacggcatcctgcgtcaggcgcggtggcgggggctgcggccggacaaggatccgagcgag
gtcgtgcgggagggctga
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