Mucilaginibacter xinganensis: MuYL_0888
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Entry
MuYL_0888 CDS
T05010
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
muc
Mucilaginibacter xinganensis
Pathway
muc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
muc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MuYL_0888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
muc03400
]
MuYL_0888
Enzymes [BR:
muc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MuYL_0888
DNA repair and recombination proteins [BR:
muc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MuYL_0888
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
KAsynt_C_assoc
DNA_primase_S
DNA_ligase_OB_2
GH3
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
ASU32788
UniProt:
A0A223NT14
LinkDB
All DBs
Position
complement(959261..961993)
Genome browser
AA seq
910 aa
AA seq
DB search
MSLEKYAEKRDFTKTAEPQAGKSKAKDQLRFVIQKHDASRLHYDFRLEMDGVLKSWAVPK
GPSTDPKTKRLAMMVEDHPYDYRSFEGIIPEGEYGGGTVIVWDEGTYEPVDEIKGKKAQE
KALLTQLKSGSLKIKLHGEKLKGEFALVKTHGMGDNAWLLIKHNDEFASTADITKKDESV
LSGKTIESMEKTGEKIWQHGHEEDVVNIKSKIKKKNPAKAIEEAVGEDTDVSVSDLAGSN
IEQLIKSAPKSAIPKKIKPMLATLVDEPFDDPEWLYEVKWDGYRAMAYINNGEVELLSRN
NKTFSEKFYPIYDLLAKLNVNMVLDGEILVLNEKGISNFSDLQNWRSEADGDLVYYVFDM
LWYQGKNLMDLPLNQRQAILKEVLPENDDRLRVSKVFNASGIDFFNAAERMGLEGIIAKK
ANSVYTPDLRSKDWLKIKVHKRQEVVIAGYTKNADTPKQFSSLLLGVYENEMLQYVGKVG
TGFNDKAQKEMMAQFKPLIIDKSPFEAIPDVNKPSRFRPDPPTAKATWLKPELVCEVAYS
EVTSDGVFRHPSFQGMRVDKKAGEVIRETAKAIEEIIDSTPEKHPDAHSAALKPPKSEGR
KTLLNPKDETQVRKICGHELKFTHLGKVYWPEDKVTKRDMFNYYYQVAEYMLPYLKDRPM
SLNRFPNGIHGPSFYQKDVKDKAPDWAKTFPYTNGEGEHKEYLVATDEASLLWMVSLGCI
EINPWFSRIQSPDNPDYCVIDLDPDKNTFDQVIAAAQEVKKVLDAIDVPSFCKTSGSTGM
HIYIPTDAKYDYDQTQMFARIIVNIVNKQLPDYTSLERMVAARKGKMYLDFLQNRPGATI
AGPYSLRPKVGATVSMPLHWDEVRAGLKMTDFTIFNTIDRLKETGDLFKGVLGNGIDLEL
TIKKAKATFG
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgagcctggaaaaatatgcagaaaaacgagactttactaaaactgcggagcctcaagct
ggcaaaagcaaggcaaaggatcagctgaggtttgtgattcaaaagcacgacgcatcacgg
ttgcactatgatttcaggcttgaaatggatggtgtattaaaaagctgggcggttcctaaa
ggtccgtccacagatcctaaaacaaagcgcctggccatgatggttgaagatcacccgtat
gactaccgcagctttgaaggtattattcccgaaggtgagtacggtggcggcaccgttatt
gtttgggacgagggaacttatgagcctgtagatgagattaaaggaaaaaaggctcaggaa
aaagcgttgttaacccagctaaagtcaggctcgttaaaaatcaagcttcacggcgaaaaa
cttaaaggggagtttgcgctggtaaaaacacacggcatgggagataatgcctggctgctg
ataaagcataacgacgaatttgcttctactgcagacatcactaaaaaggatgaatccgtg
ctgtcgggaaagaccatcgaaagcatggaaaaaaccggtgaaaagatttggcaacacggc
catgaagaagatgtagtgaacataaaatcaaaaattaaaaaaaagaatccggcaaaggca
attgaggaggctgtgggtgaagacaccgatgtatcagtttcggatttggccgggtcgaat
attgaacagctgataaaatctgcaccaaaatcagctatccccaaaaaaataaagcccatg
ctggctaccctggttgacgagccttttgatgaccccgagtggctatatgaagtaaaatgg
gacggctatcgcgcaatggcttatattaataatggcgaggttgagctgctctcgcgaaat
aacaaaaccttcagcgaaaaattttatcccatatacgacctgctggcaaaactgaacgtt
aatatggttttggatggcgagatactggtgcttaacgaaaaagggatctccaatttcagc
gaccttcaaaactggcggagcgaggccgatggcgacctggtttattatgtatttgacatg
ctttggtaccagggtaaaaacctgatggacttaccgctaaaccagcgccaggccatatta
aaagaagtgctgccggaaaatgacgaccgtttgcgggtgagcaaagtatttaatgccagc
ggcatagatttttttaacgcagcagagcgaatgggactggaggggattatcgcaaaaaaa
gcgaacagcgtttatacgcctgatctccgctccaaagattggttgaaaataaaagtccat
aaaaggcaggaagtagttattgccggttacaccaaaaatgcagacaccccaaagcaattt
agctcgttgttgctgggtgtttacgaaaatgagatgttgcaatatgttggtaaagtcggc
accggatttaatgataaggcgcaaaaagaaatgatggcacaatttaagccgctgataatt
gataagagtccttttgaagctattccggacgtaaacaagccttcacgatttcggcccgat
ccgccaacagcaaaggccacctggctgaagcccgaactggtgtgcgaagtagcttacagc
gaagtaacaagcgatggtgtatttagacacccctctttccagggaatgcgggtagataaa
aaagctggagaagtgattagggaaactgcaaaagctatagaagaaattatagattcgaca
ccagagaaacaccccgacgcccattccgctgcattaaaaccgccgaagagcgaaggacgc
aagactttgttaaaccctaaagatgaaacgcaggtgcgcaaaatttgtgggcacgagctg
aaatttacgcaccttggcaaggtttactggccggaggacaaggtaaccaaaagagatatg
tttaattactattaccaggttgctgagtatatgttgccttatttaaaagaccggccaatg
tcgcttaacaggtttcccaatggcattcacgggcccagcttttatcaaaaagacgtaaaa
gacaaagcgcccgattgggcgaaaacatttccatacaccaacggtgagggtgaacataaa
gaatacctggttgccaccgacgaggcaagcctgctttggatggtatccttagggtgtatt
gagataaacccatggttcagcaggatccaatcgcctgataaccccgactattgtgtgata
gacctcgaccccgataaaaacacgttcgaccaagtgatagcggcggcacaggaagtaaaa
aaggtacttgatgcaatagatgttccctctttctgtaaaacatcaggttcaacaggtatg
catatttatatacccacggatgcgaaatatgattatgatcaaacacaaatgtttgcccgc
attatagtgaatattgtgaataaacagttacctgattacaccagcctggaaagaatggtt
gctgcacgtaaaggaaagatgtacctcgactttttacaaaaccgccccggcgctactatt
gcaggcccctattccctacgcccaaaagtgggtgcaaccgtatcaatgcccctgcattgg
gacgaagtaagggcaggccttaaaatgacagattttaccatttttaacacaattgataga
cttaaggaaaccggtgacctttttaaaggggtgctgggtaacggtattgatctggagctg
accatcaagaaagccaaagccacatttggctga
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