Pseudoduganella umbonata: FCL38_15805
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Entry
FCL38_15805 CDS
T06138
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
mum
Pseudoduganella umbonata
Pathway
mum02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
mum00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FCL38_15805 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mum03021
]
FCL38_15805 (rpoD)
Transcription machinery [BR:
mum03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FCL38_15805 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Ribosomal_60s
GerE
Merozoite_SPAM
Motif
Other DBs
NCBI-ProteinID:
QCP11721
LinkDB
All DBs
Position
complement(3827499..3829772)
Genome browser
AA seq
757 aa
AA seq
DB search
MPAKKPETKAAEKPSKVTAKAAKTADKSETSTEAGVDPRVAAANPPAVSQTTDAATLAAI
DTSGYVLPSVKVPGRRGRKPKEFQPENDEVAALNAVERAELKAVDKAKAKDRKAKEKALL
KDAFSSDTEATEEELERRRQKLKTLIKFGKERGFLTYAEINDHLPDNIVDPEAIEGIIGT
FNDMGIAVYEHAPDAETLLLSDNVATVTSDDEAEAAAEAALSTVDSDFGRTTDPVRMYMR
EMGSVELLTREGEIEIAKRIEDGLKDMIQAISACPVTIAEIIATSDRIRHDEIKIDEIVD
GLVDENEDAPAPAAPVAPSEDDDDEEEDEEEEEEEEEEAAGSGAAAGYSAEQLETLKNNA
LAKFDEIANQFDKMRKAFEKEGYSSKSYTKAQDAISNELLGIRFTAKVVEKLCDTLRGQV
DEVRHIEKQILDVAVNKCGMPRAHFIKVFPGNETNLEWVDGEVAAGHAYSAILGRNIPTI
KELQQRLIDLQARVVLPLPDLRNINRQMAAGEMKARKAKREMTEANLRLVISIAKKYTNR
GLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMI
ETINKMNRISRQILQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDS
HLGDFIEDNNTLAPSDAALHASMRGVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVG
KQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGN
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
gtgccagcaaagaaacctgaaaccaaagcggctgaaaagcccagcaaagtgaccgccaag
gcagccaagacggccgacaagtccgaaaccagcacggaggcgggcgtggatccgcgcgtg
gccgcggccaatccgccggcggtcagccagaccaccgatgcggcgaccctcgccgccatc
gacacgtccggctacgtgctcccgtccgtgaaggtgccggggcggcgcggccgcaagccg
aaggaattccagcccgagaacgacgaagtcgccgcgctgaacgccgtcgagcgcgccgaa
ctgaaggccgtggacaaggcaaaagccaaggaccgcaaggccaaggaaaaggcgctgctg
aaggatgcgttctcgtcggatacggaagccaccgaggaagagctggaacgccgccgccag
aagctgaaaacgctgatcaagttcggcaaggaacgcggtttcctcacgtatgccgagatc
aacgaccacctgcccgacaatatcgtcgacccggaagcgatcgaaggcatcatcggcacg
ttcaacgacatgggcattgccgtgtacgagcacgcgcccgatgccgaaacgctgctgctg
tccgataacgttgccacggtcaccagcgacgatgaagcggaagccgcggccgaggccgcg
ctgtccaccgtcgactccgacttcggccgcacgaccgacccggtgcgcatgtacatgcgt
gaaatgggctccgtcgagctgctgacgcgcgagggcgagatcgagatcgccaaacgcatc
gaggatggcctgaaagacatgatccaggcgatctccgcctgcccggtcacgatcgccgag
atcatcgccacctccgaccgcatccgccacgacgaaatcaagatcgacgagatcgtcgac
ggcctcgtcgatgaaaacgaggatgcgccggctcctgccgcgccggtcgccccgtccgag
gacgacgacgacgaggaagaagacgaggaagaggaagaagaggaagaagaagaggccgcc
ggttccggcgcggccgcgggctactcggccgagcagcttgaaacgctgaagaacaatgcg
ctggccaagttcgatgaaatcgccaaccagttcgacaagatgcgcaaggcctttgaaaaa
gaaggctacagctcgaagtcgtacaccaaggcgcaggatgcgatctcgaacgaactgctg
ggcatccgcttcacggccaaggtcgtcgaaaagctgtgcgatacgctgcgcggccaggtc
gacgaagtgcgccacatcgagaagcagatcctcgacgtggccgtgaacaagtgcggcatg
ccgcgcgcccacttcatcaaggtcttccccggcaacgaaacgaacctggaatgggtcgac
ggcgaagtggccgccggccatgcctacagcgcgatcctgggccgcaacattcccacgatc
aaggaactgcagcagcggctgatcgacctgcaagcccgcgtcgtgctgccgctgccggac
ctgcgcaacatcaaccgccagatggcggccggggaaatgaaggcgcgcaaggccaagcgc
gagatgacggaagcgaacttgcgtctggtgatctcgatcgcgaagaagtacacgaaccgc
ggcctgcaattcctcgacctgatccaggaaggcaatatcggcctgatgaaggcggtggac
aagttcgagtaccgccgcggctataaattctccacgtacgccacgtggtggatccgccag
gccattacccgctcgatcgccgaccaggcgcgcacgatccgtattccggtgcacatgatc
gagacgatcaacaagatgaaccggatcagccgccagattttgcaggaaacgggtgccgag
cccgatccggcgaccctggcgatcaagatggagatgccggaagacaagatccgcaagatc
atgaagatcgccaaggaaccgatctccatggaaacgccgatcggcgacgacgacgattcc
cacctgggcgacttcatcgaggacaacaacaccctcgcaccatcggatgccgcgctgcat
gcgtcgatgcgcggcgtggtgaaggacgtgctcgattccctgacgccgcgtgaagcgaaa
gtgctgcgcatgcgcttcggtatcgaaatgtcgaccgaccacacgctggaagaagtgggc
aagcagttcgacgtgacgcgcgaacgtatccgccagatcgaagcgaaggcgctgcgcaag
ctgcggcatccgtcgcggtcggacaagctgaagagcttcctggaagggaattga
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