Musa acuminata (wild Malaysian banana): 103982107
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Entry
103982107 CDS
T03447
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1a
KO
K10695
E3 ubiquitin-protein ligase RNF1/2 [EC:
2.3.2.27
]
Organism
mus
Musa acuminata (wild Malaysian banana)
Pathway
mus03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
mus00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
103982107
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mus04121
]
103982107
03036 Chromosome and associated proteins [BR:
mus03036
]
103982107
Enzymes [BR:
mus01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103982107
Ubiquitin system [BR:
mus04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
103982107
Chromosome and associated proteins [BR:
mus03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
103982107
Noncanonical PRC1 (PRC1.1)
103982107
Noncanonical PRC1 (PRC1.3/1.5)
103982107
Noncanonical PRC1 (PRC1.6)
103982107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_5
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4_4
zf-rbx1
zf-Nse
zf-RING_10
ZNF512_C2H2
zf-C3HC4_5
zf-RING_6
zf-RING_11
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
103982107
NCBI-ProteinID:
XP_009397196
UniProt:
A0A804IZ21
LinkDB
All DBs
Position
4:29771795..29777732
Genome browser
AA seq
490 aa
AA seq
DB search
MPAQKRPLTPPPLDDQVPAPDEPPPSPLPPPPLSTQQQQQQQQQQKQEPDKEDAGGGEAD
EGKAPAETPLAQDDSDGGSGGGQSSNEDDEEAEKPEFILVKLADIRKEVQCPICLGIIRK
TRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIATLYPDIDKY
EEEELAFHEEEKSRNKKIQAYITETFRRQSEALGRRRSTAKAAAVFGRKPQGSYRNHLRG
RGRSIGGETAVAGSDEEEEEANGNDVTKDTSSADEPSPEQRPKRCKRWGAPRSSPARTAG
SGDVGSEENDDFEVNREPLGTSPLRAGNREMLAWGKNGTRSQTRHSSTSGLNGRLVKGGR
LAKLVDCLRNLDEADDEFDVHLTLVPLDDENMPNLEQPYLCCRPTLSIRHLCQFIALQTS
VQAEEVEMYARKPQCRNLAVGASNSMDEASTDPSIGLQMLEGQESLAAICASFTSDQGEM
VLVYRRKIQG
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcccaaaagcgcccgcttactcctccgcccttggacgaccaagtccccgccccc
gacgagccccctccttcgcctcttcctcctccgccgctctccactcagcagcagcagcag
cagcagcagcagcagaagcaggagccggacaaagaggatgctggcggcggcgaagcggac
gagggtaaggcgccggcggagactcctctagcacaggacgattctgatggcggaagcggt
ggcggtcaatcgtcgaacgaggacgacgaggaggccgagaaaccggaatttatcctagtg
aaactagccgacattcgaaaagaagtgcagtgccctatctgcttagggataatacgtaag
acaaggacggtcatggaatgcctgcatcgcttttgtagggaatgtattgacaaatcaatg
agacttggaaacaatgaatgtcctgcatgccgcacccattgtgcaagtcggcgttctttg
agagatgatcccaactatgatgcccttatagcaaccttatatccggatattgataagtat
gaagaagaggaactggcttttcatgaagaggagaaatcccgcaataagaagatccaagca
tacataactgagacatttcgacgacaatcagaagcacttggtaggaggaggtccacagct
aaagctgctgcagtattcggaagaaaaccacaaggaagttaccgaaatcatctgcgtgga
agaggcagaagtattggtggtgaaactgcagttgcaggctctgatgaggaagaagaagaa
gcaaatggtaatgatgtcaccaaagatacctcgtctgcagatgagccctctcctgaacaa
aggccgaagagatgcaagagatggggggctcctcgatcttcgccagctagaacagcaggc
agtggtgatgttggctccgaggaaaacgacgattttgaagtcaacagagagccccttggg
acatcgcctttgcgagcaggaaacagagagatgcttgcatggggtaagaatggtacacgt
agtcaaactagacatagcagtactagtggtttaaatggtagattggtcaagggtgggcgc
ttggccaaattggtggactgcctgcgcaatttagatgaagctgatgatgagtttgatgtg
catctgaccctggttcctttggatgatgaaaatatgccaaatttggaacagccatatctt
tgctgccggccaaccctgtcaattagacatctttgccaatttatcgctcttcagacatct
gtccaagctgaagaagttgagatgtatgcgaggaaacctcaatgccgaaatttagcagtt
ggggcttccaactcaatggacgaggcgtcgactgatccttccataggcctccagatgttg
gagggacaagaatctctagcagcgatttgtgcttctttcacgagtgaccaaggggagatg
gtgttggtttaccgtcggaagattcagggctag
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integrated database retrieval system
