Massilia varians: MasN3_22690
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Entry
MasN3_22690 CDS
T08769
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mvar
Massilia varians
Pathway
mvar03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mvar00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MasN3_22690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mvar03400
]
MasN3_22690
Enzymes [BR:
mvar01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MasN3_22690
DNA repair and recombination proteins [BR:
mvar03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MasN3_22690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
BDT58775
LinkDB
All DBs
Position
2543282..2545960
Genome browser
AA seq
892 aa
AA seq
DB search
MPDALKLYKAKRNFDITSEPLDGGAPSTEALTFVIQKHWASRLHYDFRLELDGTMKSWAV
PKGPSYDTHDKRMAVHVEDHPISYSDFEGTIPPKQYGAGKVIIWDKGTWEPIGDPHEGYR
KGNLKFAIHGHKMHGRWVLVRMKGRGNDKQEPWLLIKENDEHARPAEEFSVVDEMPDSVK
DLPMPERARGKVAALKAEAGLDTKDAQDAPKPARKRTAAAKPAAKTAAKAAATSADKSTR
AKKAAPPSLPEGVVEAALPEAFTPELATLVDGPPPDPENWIFEVKFDGYRMLARIEQGKV
RLITRNANDWTDKLAPLREEIERARLPDGWYDGEIVVHDENGKPNFGLLQLAFDGVRTAD
IVYFLFDAPYCNGYDLRNVPLVERRAALEQILRKAKSDKLRFSSEFGSNPDELVVAACKI
GLEGVIGKRRDSRYVSRRSPEWIKLKCGLRQEFVIGGYTDPKGSRKGVGSLLLGTYDREG
MLRYAGNVGSGFNHATLMDIKERLEALRTDQSPFPPRAVPGRQHHWVKPVLVAEVSFSEW
TNTGSVRHPVFQGLRQDKPAKGITREEPRHIEDIEAGKARTETPDEPVSPPPAGLHRKLP
ETLRVTNPERVVDPSTGITKLDIIRYYALVGELMMEHLKRRPLTLVRAPAGIGAELVYQK
HADVKKLPGVKQMDQALDPDNPPMLEIAGVEGILSLAQWNAIELHTQNAVARSYETPDRM
VFDLDPGEGVEWKQMQEAAQVMHAFLDELGLPAFLKTSGGKGLHVVVPVKPEYGWDTVKA
FSQAIVRHLAATLPERFAFKSGAKNRVGKIFIDYLRNGRGATTISAWAARARPGLGISVP
LAWDELDKLKSSAQWTVANVHTRLDKGNEPWAGYAKAAKGLTKAMKILGFDE
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgccagacgcgctcaaactctacaaggccaagcgtaatttcgacatcacgtccgagccc
cttgacggcggcgcccccagtaccgaggcgctgaccttcgtcatccagaaacactgggcc
tcgcgcctgcattacgatttccggctggaactcgacggaaccatgaagagctgggccgtc
ccgaaaggaccgagctacgacacccacgacaagcgcatggccgtgcatgtcgaggaccac
ccgatttcctattccgacttcgagggcacgattccgcccaaacaatatggcgcggggaag
gtcatcatctgggacaagggcacctgggagccgatcggcgacccgcacgaaggctaccgc
aagggcaacctgaagttcgccatccacggccacaagatgcacgggcgctgggtgctggtg
cgcatgaagggacggggcaacgacaagcaggaaccctggctcctgatcaaggagaacgac
gagcacgcccggccggccgaggaattctcggtggtggacgagatgcccgacagcgtcaag
gacctgccgatgccggagcgcgcgcgcggcaaggtggccgccttgaaggccgaggccgga
ctcgatacgaaagacgcgcaagatgcgcccaagccggcgcgcaagcggacggctgccgcc
aagcccgcggcaaagaccgcggccaaggccgccgcaacatcggcggacaagtccacgcgc
gccaaaaaggccgcgccacccagcctgccggaaggcgtggtcgaggcggccctgcctgaa
gctttcacgcccgaactggcgaccctggtcgacggcccgccgcccgaccccgagaactgg
atcttcgaggtcaagttcgacggctaccgcatgctggcgcggatcgagcagggcaaggtg
cgcttgatcacgcgtaacgccaacgactggaccgacaagctggcgccgctgcgcgaggaa
atcgagcgcgcccggctgccggacggctggtacgacggcgagatcgtggtccacgacgag
aacggcaagccgaacttcggcctgctgcagctggccttcgatggcgtgcgcaccgccgac
atcgtgtacttcctgttcgatgcgccttattgcaacggctacgacctgcgcaacgtgccc
ctggtcgagcgccgcgccgcgctggagcagatcctcaggaaggccaagtccgacaagctg
cgcttctcgagcgagttcgggagcaacccggacgagctggtggtggccgcctgcaagatc
gggctggagggcgtgatcggcaagcgccgcgattcgcgctacgtgtcgcgccgctcgccg
gagtggatcaagctcaagtgcggcctgcgccaggaattcgtgatcggcggatataccgat
cccaagggttcgcgcaagggcgtcggctcgctgctgctggggacctacgaccgcgagggc
atgctgcgctacgcgggcaatgtgggctccggcttcaaccacgctacgctgatggacatc
aaggagcgcctcgaagcgctgcgtaccgaccaaagcccgttcccgccgcgcgcggtgccg
ggacgccagcatcactgggtcaagccggtgctggtggccgaggtgagcttctcggaatgg
accaataccggttcggtgcgccatccggtgttccagggcctgcgccaggacaagccggcc
aagggcatcacgcgcgaggagccgcgccacatcgaggacatcgaggcgggcaaggcgcgg
accgagacgcccgacgaaccggtgtcgccgccgccggccggactgcaccgcaagctgccg
gagacgctgcgcgtgaccaatccggagcgggtggtcgacccctcgaccggcatcaccaag
ctcgacatcatccgctactacgcgctggtgggcgagctgatgatggagcacctcaagcgc
cgtccgctgaccctggtgcgcgcgcccgccggcatcggcgcggaactggtgtaccagaag
catgccgacgtgaagaagctgccgggcgtgaagcagatggaccaggccctggacccggac
aacccgccgatgctggagatcgccggcgtggagggcatcctgtcgctggcgcagtggaac
gcgatcgagctgcacacccagaacgcggtggccaggagctacgagacgccggaccgcatg
gtgttcgacctcgatccgggcgaaggcgtggagtggaagcagatgcaggaagcggcgcag
gtcatgcatgccttcctcgacgaactggggctgccggctttcctcaaaaccagcggcggc
aagggcctgcacgtggtggtgccggtgaaaccggaatacggctgggataccgtgaaagcc
ttctcgcaggccatcgtgcgccacctggcggcgacgctgccggagcgcttcgccttcaag
agcggcgccaagaaccgggtcggcaagatcttcatcgactacctgcgcaacggccgcggc
gccaccaccatcagcgcctgggcggcgcgcgcccggcccgggctgggcatctcggtgccg
ctggcctgggacgagctggacaagctcaagtcgagcgcgcagtggacggtggcgaacgtg
cacacgcggctggacaaggggaacgagccctgggcgggctatgcgaaagccgcgaaaggg
ctcaccaaggcgatgaagatcctcggcttcgatgaatag
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