Mannheimia varigena USDA-ARS-USMARC-1312: X874_15490
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Entry
X874_15490 CDS
T03028
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
mvg
Mannheimia varigena USDA-ARS-USMARC-1312
Pathway
mvg03420
Nucleotide excision repair
mvg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mvg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
X874_15490
03430 Mismatch repair
X874_15490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mvg03400
]
X874_15490
Enzymes [BR:
mvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
X874_15490
DNA repair and recombination proteins [BR:
mvg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
X874_15490
MMR (mismatch excision repair)
Other MMR factors
X874_15490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD_C
UvrD-helicase
AAA_19
PcrA_UvrD_tudor
UvrD_C_2
AAA_30
Viral_helicase1
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AHG78183
LinkDB
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Position
complement(1677820..1680018)
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AA seq
732 aa
AA seq
DB search
MDFSLLLDGLNDKQREAVAAPIGNYLVLAGAGSGKTRVLTHRIAWLIGVENVPESNILAV
TFTNKAAAEMRHRIEHTLSQSGDNRLFGMWVGTFHSIANRLLRSHYLDADLPKDFQIMDT
EDQQRLLKRLLKLHNIDEKHFPSKHVAWYINAQKDKGKRAKDIDHHNDPNEKKLVEIYQI
YQDACDRAGLLDFAELLIRTYELFSQKPAILQRYQQRFQQILIDEFQDTNNIQYDLIRLL
AGNVGKVMIVGDDDQSIYGWRGAQVENIQRFLKDYDNAQTIRLEQNYRSTGNILSCANEL
IANNDNRLGKNLWTDSGDGEPVDIYCAFNELDEARFVASQIKQWKEDEGDLAECAVLYRS
NSQSRVIEEALIQANIPYRIYGGMRFFERQEIKDALAYLRLIANRQDDAAFERVINTPTR
GIGDRTLDTLRQITRNRQITLWQAIQVAVQEEQLSGRAASSLLRFVELINALDQETEQMS
LAEQTDYVIKKSGLYEMYKQEKGEKGEVRIENLEELVTATKQFVKPDEAEDLTDLTAFLT
HASLEAGEAQASQHEDYVELMTLHSAKGLEFPRVFMVGVEEGLFPSGMSFDEGRLQEERR
LAYVGITRAKKKLTISYAESRRLYGKEERHVPSRFIAELPEEHIREVRLRGSINRAASFN
QSSSFAKNPQKTTASILNNDSWKMGQKVNHTKFGQGTIINVEGSGEATRLQVAFVGNGIK
WLIAKMANLEKI
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
atggatttttcattattattagacggtttaaatgacaagcagcgagaggctgttgctgca
ccaatcggcaattacttggttctggcaggagccggttcaggcaaaacgcgagttttaacc
caccgtattgcgtggttaattggcgtagaaaatgtgccagaatcgaacattctcgccgtt
acctttaccaataaagccgcagcagaaatgcgacatcgtattgagcatactctttctcaa
tcaggcgataaccgcctgtttggtatgtgggtaggcactttccatagtattgctaatcgt
ttattacgctcccattatttagatgccgatttaccgaaagatttccaaattatggatacc
gaggatcagcagcgtttacttaaacgcttgttgaaattacacaatattgatgaaaaacat
ttcccatcaaagcacgtggcgtggtacatcaacgctcaaaaagacaaaggcaagcgagcg
aaagatattgatcaccataacgatccgaacgaaaaaaaattagtggagatctaccaaatt
taccaagatgcctgcgaccgcgcaggattgcttgatttcgctgagttgctgattcgaacc
tatgaattattcagccaaaaaccggcaattctgcaacgttatcaacaacgttttcagcag
attttgatcgatgagttccaagacaccaacaacattcagtacgatcttattcgcttatta
gcaggcaatgtgggtaaagtaatgatcgtgggtgatgatgaccaatcgatctacggttgg
cgtggggctcaggtagaaaatattcagcgtttcttaaaagattatgataatgctcaaact
attcgtttggaacaaaattatcgttcaacaggcaacattttaagctgtgccaatgagtta
attgccaacaacgacaaccgattaggcaaaaatttatggacagacagcggcgatggcgag
cctgtggatatttactgtgctttcaatgagttagatgaagctcgctttgttgcctcacaa
atcaaacagtggaaggaagacgagggcgatcttgctgaatgtgcggtgctttatcgtagc
aatagccaatcccgtgtgattgaagaagccttaattcaagcaaacattccataccgtatt
tatggtggtatgcgattctttgaacgccaagagatcaaagacgcgttggcgtatctgcgt
ttgattgccaaccgccaggacgatgctgcatttgagcgtgtgattaacaccccaaccaga
ggtattggcgacagaaccttagacacgcttcgccaaattactcgaaaccgccaaattacc
ttatggcaagccattcaagtggcagtgcaggaagaacaactttcaggcagagcggcttct
tcgttgctccgctttgttgaattgattaatgccttagatcaagaaaccgagcagatgtct
ttagctgagcaaaccgattatgtaattaaaaaatcgggcttgtatgaaatgtacaaacaa
gaaaaaggcgagaaaggtgaagttcgtattgaaaacttagaagagctagtaactgccact
aaacagtttgttaaacctgatgaagcagaagatttaactgatctcactgcctttttaact
cacgcatcccttgaagctggtgaagcacaagcctctcaacacgaagattatgtagaactg
atgacgcttcattcagcgaaaggcttagaattccctcgtgtctttatggtgggtgtggaa
gaagggcttttcccaagcggaatgagctttgatgaaggaaggctacaagaagagcgtcgc
ttggcatacgttggcattactcgtgcgaagaagaaactcaccattagctatgcggaatct
cgccgtttatacggcaaagaagagcgccatgttccttctcgctttattgcagagctaccc
gaagagcatatccgtgaggtgcgtttaagaggctcaatcaaccgtgcggcgagctttaat
caatcttcctcatttgcaaaaaatccgcaaaaaacgaccgcttctattttgaataatgat
agttggaaaatgggacaaaaagtcaatcatactaaatttgggcaaggtacgattatcaat
gtggaaggttcaggcgaagcaacccgtttacaagtggcttttgtcggtaatggcattaaa
tggttgattgcgaaaatggcgaatttagagaagatttaa
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