Moritella viscosa: MVIS_2332
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Entry
MVIS_2332 CDS
T03770
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mvs
Moritella viscosa
Pathway
mvs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mvs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MVIS_2332
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mvs03400
]
MVIS_2332
Enzymes [BR:
mvs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MVIS_2332
DNA repair and recombination proteins [BR:
mvs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MVIS_2332
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
dATP-dGTP_PPHyd
Motif
Other DBs
NCBI-ProteinID:
CED60279
UniProt:
A0A090IJA9
LinkDB
All DBs
Position
1:2670999..2674475
Genome browser
AA seq
1158 aa
AA seq
DB search
MKSTAILSLPLPKKQGDKIAYGNLVGSSLAFTLAELCSQTNSPILAVVADTPSALKLEQE
VRHFLADDKPLVTFPDWETLPYDNFSPHQDIISQRIHALHRFQQTTSGLIIVSVNTLMQR
IAPVSFLAQHSLIVKTGDKIDMHAMRQRLETSGYNAVDQVLEHGEFSARGSILDLYPMGS
NSPFRIDFFDDEVEEIRGFNTETQRSEGTLKAINLLPAHEFPTDDKAIELFRQQFRALFT
PSREAESIYQQVSKGFLPTGIEYYHPLFLTETATLFDYLPKQLIIAQVGELHQASQVFFQ
DIEKRYEDRRHDIQRPLLTPSSLYLPVAELFQALGQYTKVSLSNERLNEKSGNTNLSFSS
LPEISVNHQKKAPLAPLLEFIEGFDGKIIFSVESEGRRETLLELLEKTKLKPKAITSIAK
FLKAKPTIGIWVSQCENSFIIDDLNVAIICENELLGHKIIQRRRTDKKIQANNDALVRNL
TELSIGQPVVHIEHGVGRFLGLQIIANAGMETEFLTLEYANAAKLYVPVSALHLISRYSG
AGEASAPLHKLGSDSWVKSKTKAMERVRDVAAELLDIYAQRAAKSGFQYKCDKESYVAFA
DGFPFEETDDQKTAIQAVLDDMRQDKTMDRLVCGDVGFGKTEVAMRAAFMAMMNDKQVAV
LVPTTLLAQQHFENFKDRFANWPVRVEVISRFKTAKEQKLILADVKAGKVDLLIGTHKLL
SNKIEFADLGLLIIDEEHRFGVRQKEKVKALRADIDILTLTATPIPRTLNMAMNGMRDLS
IIATPPAKRLAVKTFVRQYEDNVVKEAIMREIMRGGQVYFLHNNVDSIDKTAEALSLLLP
EARIVTAHGQMAERELESVMADFYHQRFNVLVCTTIIETGIDIPTANTIIMDRADHLGLA
QLHQLRGRVGRSHHQAYAYLLTPHPKRITSDAKKRLEAIASLEDLGAGFTLATHDLEIRG
AGELLGDEQSGQITSVGFSLYMEMLDQAVKSIKEGKSVSLEEALKNQTEIELRVPALLPD
DYIHDVNIRLSLYKRIASCQNEEQLREVQVELIDRFGLLPDNAKNLIRQTELKLQAEPLG
IKRLEIGPAGGYISFGEDNQVDIGYLIRLIQQQPRVYSMDGPSKLKFAIKSPDAKDRVKL
VEAMLVEFAKNKIAGVKR
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcaacagctattctttctctaccgttaccgaaaaagcaaggcgataagatcgcc
tacggtaaccttgttggcagtagcctcgcattcacacttgcagagctgtgttcacaaaca
aattcccctatccttgcggttgttgcagataccccaagtgccttaaaacttgaacaagaa
gtacgtcattttttagcggatgataaacccttagtaaccttccctgattgggaaacattg
ccctatgataacttctcgccacaccaagatattatctcgcaacgtattcatgccctgcac
cgttttcagcagacgactagcgggctgattattgtatcggtcaatactttgatgcaacgt
atcgccccggtaagttttctagcccagcatagcttgatcgtcaaaacaggcgataaaatt
gatatgcatgcaatgcgccaacgtttagaaaccagtggttacaatgctgtagaccaagta
ttagagcacggtgaattttctgctcgcggttcaattctagatctgtatccaatgggcagt
aattcaccgtttcgaatcgatttctttgatgacgaagtagaagaaattcgcggttttaac
accgagactcagcgctctgagggtacccttaaagccattaatttattacctgcgcacgaa
tttccaacagatgataaagcgattgaattattccgtcagcagtttagagcattgtttacg
ccatcgcgtgaagctgaatccatttatcagcaagtaagcaaaggtttcttaccaacaggt
attgagtattatcacccgttattcttaactgaaactgccacgttatttgattatttaccg
aagcaattaattattgctcaagtgggtgaattacatcaggcatcacaagtgttttttcaa
gatattgaaaagcgctacgaagaccgacgtcatgatattcaacgtccattgcttacaccg
agttcactttacttacctgttgcagaactattccaagcacttggccagtacacgaaagta
agcctaagcaatgaaagattgaatgaaaaatcaggtaataccaacttaagctttagttct
ttacctgaaatatcagttaaccatcagaaaaaagccccgcttgcacccttgcttgaattt
atcgaagggtttgacggcaagattatttttagtgttgaatctgaaggtcgccgcgaaaca
ttattagagttacttgagaaaaccaagttaaaaccaaaagcaataaccagtattgctaaa
tttctaaaagctaagcctactattggtatttgggttagtcagtgtgaaaacagttttatt
attgacgatcttaatgtcgctatcatttgtgaaaatgaactgcttggtcacaagatcatc
cagcgccgccgtaccgataaaaaaatacaagcaaacaatgatgcgctagtacgaaacctc
acagagttaagtatcggtcaacctgttgtacatatcgagcatggcgtcggtcgttttctc
ggcctacagattattgccaacgcagggatggaaaccgagtttttaactcttgaatatgcc
aatgcagccaagctctatgtacccgtttcagcattacaccttatcagtcgttatagcggt
gcaggtgaagcatcagctcccctacataaactaggcagtgatagttgggtaaaatccaaa
actaaagcaatggaacgtgttcgagatgttgctgctgaattattagatatctatgcacaa
cgcgcagccaaaagtggttttcaatataaatgcgacaaagaatcgtatgtagcttttgct
gatggtttcccatttgaagaaacagatgatcagaaaacggcaattcaagccgtactagat
gatatgcgccaagacaaaaccatggatcgtctcgtatgtggtgacgtgggctttggcaaa
acagaagtagcaatgcgtgcagccttcatggcaatgatgaacgacaaacaagtcgccgtg
ctggtaccgaccaccttacttgctcagcagcatttcgaaaatttcaaagatcgttttgct
aactggcctgtacgtgtcgaagtgatctctcgctttaaaacagccaaagaacaaaaactt
attttggctgatgtaaaagcgggtaaagttgatttactgatcggaacacataaattactc
agtaataaaattgagtttgccgatcttggtttacttattattgacgaagaacatcgtttt
ggtgtccgtcaaaaagaaaaagtcaaagcgctacgtgccgacattgatattttaacacta
acagcaacgccaattccaagaacgctgaatatggccatgaatggcatgcgtgatttatca
atcatagcaaccccaccagcaaaacgtttagccgttaagacatttgtccgtcaatacgag
gacaatgtagtaaaagaagcaatcatgcgtgagatcatgcgtggtggtcaggtttatttc
ttacataacaatgtcgactcgatagataaaacagcagaagcactgtcattactcctacct
gaagcgcgtattgttacggcccacggacaaatggcagaacgtgaattagaatccgttatg
gctgatttctatcatcaacgtttcaatgtactggtatgtacaaccattatcgaaacgggt
atcgacatcccgactgccaatacaattattatggatcgtgcagatcatctcggtttagca
caacttcatcaattacgtggtcgtgttggtcgttctcatcaccaagcctatgcctactta
ttaacgccacaccctaaacgcatcaccagcgacgctaaaaaacgtcttgaggctattgca
tcattagaagatcttggcgcaggtttcaccttagcaacacacgatcttgagatccgtggg
gcaggtgaactattaggtgatgaacaaagcggtcaaataacctctgttggtttctccttg
tatatggaaatgctcgaccaggcagtgaaaagcatcaaagaaggtaaatcagtttcgctt
gaagaagcacttaaaaatcaaactgaaattgaactgcgtgtgcccgcactattaccagat
gattacattcatgacgttaatatacgtttatccctgtataaacgtatcgcaagttgtcaa
aatgaagaacagttacgtgaagttcaagttgaacttattgaccgttttggattattacct
gacaatgctaaaaacttgatccgtcaaaccgagttaaaattacaagctgagcctttaggt
attaaacgacttgaaataggtcccgctggtggctatattagctttggtgaagataaccag
gttgatataggttatcttatccgtctaatccagcaacaacctcgtgtgtatagcatggat
ggaccatcaaaattgaagtttgcaatcaaatcaccggatgcaaaagatcgtgttaaatta
gtagaagcaatgctagttgaatttgcaaaaaataagattgcaggagttaaacgttga
DBGET
integrated database retrieval system
