Mycobacterium xenopi: MYXE_27190
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Entry
MYXE_27190 CDS
T06649
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mxe
Mycobacterium xenopi
Pathway
mxe03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mxe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MYXE_27190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mxe03400
]
MYXE_27190
Enzymes [BR:
mxe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MYXE_27190
DNA repair and recombination proteins [BR:
mxe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MYXE_27190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
BBU22929
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All DBs
Position
2803547..2804446
Genome browser
AA seq
299 aa
AA seq
DB search
MPRVAVEITHPDRVLFPADRITKADLVDYYAAVAETMLPHLKDRPLTLQRFPRGIDQQGF
IQQDFADTMPDWMSSAEVAKEGGTVVHPLAQRPEALVWLANQNSITVHAWLSRLGRLDTP
DRLVFDLDPSGDDFPVVRETARAVAGVLDDIGLAGYVQTTGSRGLHVVVPLRGDADFDTV
RRFARDVADVVVADDPAHRTVEARKDKRRGRVYVDVMRNAYAQTAVAPYSVRARRGAPVA
TPLEWDELGSRNMSPDRFTIRDIPKRLARQRDPWANMNRRARSLTEPMRRLKKIHAGTS
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
atgccccgcgtcgcagtcgagatcacgcacccggaccgggtgctgttccccgcggacagg
atcaccaaagccgacctcgtcgactactacgccgcggtggccgagacgatgttgccgcac
ctcaaggaccggccgctgaccctgcagcggtttccccgcggcatcgaccaacagggcttc
atccagcaggatttcgccgacacgatgcccgactggatgagctcggccgaagtcgccaag
gaaggcggtaccgtcgtgcacccgctggcccagcgtcccgaggcgctggtctggctggcc
aaccaaaacagcatcaccgtgcacgcctggctgtcccggctgggccggctggacacaccc
gaccgactcgtcttcgacctcgacccgtccggcgacgacttcccggtggtccgagaaacc
gcgcgggccgtcgccggcgtgttggacgacatcgggctggcaggctacgtgcagacgacc
ggatcgcgcggcctgcacgtggtggtgccgctgcgcggtgacgccgacttcgacacggtc
cgcagattcgcccgcgacgtcgccgacgtcgtggtggccgacgatcccgcgcaccgcacg
gtggaagcccgcaaggacaagcgccgcggccgggtgtacgtcgacgtgatgcgaaatgcc
tacgcccagaccgcggttgcgccgtattcggtacgggcccgccgcggcgcgccggtagcc
accccgctggagtgggacgaactcggcagccgcaatatgagcccggaccggttcaccatc
cgcgatatcccgaaacggctggcccggcaacgtgatccatgggccaacatgaaccgccgg
gctcgctccctgaccgaaccgatgcgtcgcttaaagaagatccatgccggaacttcctga
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