Myotis davidii (David's myotis): 102763533
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Entry
102763533 CDS
T02992
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
myd
Myotis davidii (David's myotis)
Pathway
myd03030
DNA replication
myd03410
Base excision repair
myd03420
Nucleotide excision repair
myd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
myd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102763533 (LIG1)
03410 Base excision repair
102763533 (LIG1)
03420 Nucleotide excision repair
102763533 (LIG1)
03430 Mismatch repair
102763533 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
myd03032
]
102763533 (LIG1)
03400 DNA repair and recombination proteins [BR:
myd03400
]
102763533 (LIG1)
Enzymes [BR:
myd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102763533 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
102763533 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
102763533 (LIG1)
DNA replication proteins [BR:
myd03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
102763533 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
102763533 (LIG1)
DNA repair and recombination proteins [BR:
myd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
102763533 (LIG1)
NER (nucleotide excision repair)
Other NER factors
102763533 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
102763533 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
DDR
Motif
Other DBs
NCBI-GeneID:
102763533
NCBI-ProteinID:
XP_015423439
LinkDB
All DBs
Position
Un
AA seq
974 aa
AA seq
DB search
MQRSIMSFFHPTKEGKAKKPEETPSSARETEPPPKVALKERNGVVPESDSPVKRSGRKTA
RVLCSEGEEEEDDEAITSSKGQKPAPSSPQVSPPAPVTSPESSPSLAGTSPAATISPSGI
PKRLTARKQFSKRKIQDVLEEHGTDKGQEAKRKKAEEEAETPTENLPEPEGAKEKKAEEG
DLPMMPPEPQNACKAEPPTESGSEPMEVAKQEPQDEEQAKPPPRAPKMLSSFFTPRKPAV
KQEVKEEGPGTPRKEASKGLSHSDVSSRLANYFHLLPGLEQCLAMAGAQETLVGGAGFSS
TQHLSLAWQSLSSSSRLRMVETLSNLLRSVVALSPPDLLPILYLSLNCLGPPQQGLELGV
GDGVLLKAVAQATGRQLELVRAEAAETGDVGLVAENSRSTQRLMLPPPALTASGVLAKFR
DIARLTGSASTARKMDIIKGLFVACRHSEARFITRALSGRLRLGLAEQSVLAALAQAVSL
TPPGQEFPPAVVDAGKGKTAEARKTWLEEQGMILKQTFCQVPDLDRIVPVLLEHGLEGLP
EHCKLSPGVPLKPMLAHPTRGVSEVLKRFDEAAFTCEYKYDGQRAQVXGGRVHPFSRRDR
AGEQGVGAADPAQARPPQIKLPSVTSFILDTEAVAWDREKKQIQPFQVLTTRKRKEVDAA
EIQVQVCLYAFDLIYLNGESLVREPLSRRRQLLRENFVETEGEFVFATSLDTKDMDQIAE
FLEQSVKVPLEGLMVKTLDVDATYEIAKRSHNWLKTVSCSEGRNLSCLDTAPMHPQGRAP
ARLTVGTNYLPLSLPLSVLISRLGSQGLCLAFIPSPISPHPPLLALYFKECLCLCLPPFT
SLPNPQPSILILRPETLSSTSRCSLQARVLPAPRSYVRADGAVAPDHWLEPSTGWXVRCA
DLSLSPIYPAARGLVDSEKGISLRFPRFVRVREDKTPEQATTSAQVAWLYKRQSQIQNQE
DTDQDSDPDLECFY
NT seq
2925 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgaagcatcatgtcgtttttccaccccacgaaagagggcaaagcaaagaagccg
gaggagacacccagcagcgccagggagaccgagccccctccaaaggtggcgctgaaggag
cggaacggagtggtgcctgagagcgactctccggtgaagaggtcgggcaggaagacggcc
cgggtcctgtgcagtgaaggggaggaggaggaggacgatgaagccatcacgtcctccaaa
ggccagaagcctgcccccagctctccacaagtgtcccctcccgctcctgtcacgtcccct
gagagcagcccgtccctcgccggcacctctccggcagcgaccatctccccgtcggggatc
ccgaagcggctcacagctcgaaagcagttttctaaacggaagattcaggatgtcctagaa
gagcacggcacggacaagggccaggaagccaagaggaagaaggcggaggaagaagcagag
accccaacagaaaacctcccagaaccagaaggggccaaagagaagaaagcagaagagggg
gacctgcccatgatgccccccgagccccaaaacgcctgcaaagctgagcctccgacagaa
agcggctcagagcccatggaggtggcgaagcaggaaccccaggacgaggagcaagccaag
ccgccccccagagctcccaagatgctcagcagtttcttcaccccccggaagccggcagtc
aaacaggaagtgaaagaagaggggcctggcaccccaagaaaggaggcgtccaagggactc
tcccactcggatgtgagctccaggttagcaaactattttcatttacttccgggcctagaa
cagtgcctggccatggcaggtgctcaggaaacgttagtcggaggagcgggcttctcttca
acccagcatctgtccctggcctggcagtccctctcctcctcctccaggctccggatggtg
gagacgctgagcaacttgcttcgctccgtggtggccctgtcgcccccagacctcctcccc
atcctctacctcagcctcaactgcctcgggcccccccagcagggcctggagctgggcgtc
ggggatggtgtcctcctcaaggcggtggcccaggccacaggtcggcagctcgagttggtg
cgggctgaggctgccgagacgggcgacgtggggctggtggccgagaacagccgcagcacc
cagaggctcatgctgcccccgcccgccctcactgcctccggggtcctcgccaagttccga
gacatcgcccggctcactggcagcgcttccacagccaggaagatggacatcattaagggc
ctctttgtggcctgccgccactcagaagcccgattcatcaccagagccctgagtggacgg
ttgcgcctggggctggcagagcagtcggtgctggccgccctcgcccaggccgtgagcctc
acgcctccaggccaagaattccccccggccgtggtggatgctgggaagggcaagacagca
gaagccagaaagacgtggctggaggagcaaggcatgatcctgaagcagacgttctgccag
gtgcctgacctggaccggatcgtcccggtgctgctggagcatggcctggaggggctcccg
gagcactgcaagctgagtccaggggtccccctgaaaccaatgttggcccacccgacccgg
ggcgtcagcgaggtcctgaagcgcttcgatgaggcagccttcacttgcgagtacaaatac
gacgggcagagggcacaggtanntggggggcgggtgcatcccttcagcagaagggacagg
gccggagagcagggcgtgggggcagcagacccagcccaggcccggcccccacagattaaa
ctcccgtcggtcacgtctttcatcctggacacagaagccgtggcttgggaccgggagaag
aagcagatacagccgttccaagtgctcaccacccgcaaacgcaaggaggtggatgcagcg
gagatccaggtgcaggtgtgtttgtacgccttcgatctcatctacctcaacggagagtcc
ctggtccgagagcccctttcccgacgccggcagctgctccgggagaacttcgtggagacg
gagggcgagtttgtcttcgccacctccctggacaccaaggacatggaccagatcgcggag
ttcttggagcagtcggtgaaagtgcccctcgaggggctgatggtgaaaaccctggacgtc
gatgccacctacgagatcgccaagagatcacacaactggctcaagactgtaagctgctct
gagggcaggaacctttcctgtctcgacacagcccctatgcacccccaaggccgagctcct
gcccggctcacagttggcactaactatctgcccctctctctacctctgtcagtcttaatt
tctcgtctcggctcccagggactctgtcttgcgtttattccttctcccatttctccccac
cccccactcctggctctgtactttaaggagtgtctgtgtctctgtcttcccccatttacc
tcacttcccaacccccaaccctccatcttgattctgaggcccgagaccctctcttccacc
tcccgctgctccctgcaggcccgggtgctgcccgcccctcgctcctacgtccgggcagac
ggcgccgtggccccggaccactggctggagcccagcaccggctgggnggtcaggtgtgcg
gacctctccctctcgcccatctaccccgctgcccgcggcctggtggacagtgagaagggc
atctcccttcgcttccctcggtttgtccgcgtccgtgaagacaagacgccggagcaggcc
accaccagtgcccaggtggcctggctgtacaagaggcagagtcagattcagaaccaggag
gacacagaccaagactccgacccggacctggagtgtttctactag
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