Mycobacterium sp. EPa45: AB431_24205
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Entry
AB431_24205 CDS
T03960
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mye
Mycobacterium sp. EPa45
Pathway
mye03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mye00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AB431_24205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mye03400
]
AB431_24205
Enzymes [BR:
mye01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AB431_24205
DNA repair and recombination proteins [BR:
mye03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AB431_24205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AKK30826
UniProt:
A0A0G3IZZ9
LinkDB
All DBs
Position
complement(5134262..5136550)
Genome browser
AA seq
762 aa
AA seq
DB search
MVNEVWPPGATRGPRVTLTNADKVLYPATGTTKADVFSYYTTIADVMLPHIAGRAVTRKR
WPNGVDEPSFFEKQLASSAPGWLERATVDHRSGSTTYPIIETATGLAWIAQQASLEVHVP
QWRFTPDGKTGPATRLVFDLDPGEGVTMPQLCEVANAVRELMDDIGLTVYPLTSGSKGLH
LYAPLADPVSSNGAVVVARRVAQQLEKSMPKLVTATMTKSLRDGKVFLDWSQNSGSKTTI
APYSLRGRETPTVAAPRTWDEIGDPELRHLEYHEVLARVAEQGDLLAALDDDVPRHDRLT
TYRSMRDAAKTPEPVPAAKPAVGENNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLP
ATPAVNHLAVHTEDHPLEYATFEGQIPKGEYGGGKVIIWDAGTYEAEKFRDSGDKGGEVI
VDLHGQRISGRYALIQTNGDQWLAHRMKEQPTPRLQDYSPMLATLGSVEKLTGAQYAFEG
KFDGYRLLVEISGGQLRAQSRSGRDLTADYPQLRSLAADLADHDVILDGEVVALDADGVP
NFGEMQNRVRATRIEFWAFDILRLDGRSLLKAKYRDRRKVLETFAEGTDLIVPPLLDGDG
PEALEFSRKKKWEGVVAKKWDSTYQPGRRSAAWIKDKNWNTQEAVIGGWREGNGGRSSGI
GALLLGIPGDGGLRFVGRVGTGFSDKELTKLKKILEPLHTDESPFATPLPRVDAKGVTYV
RPELVGEVRFGEWTSDGRLRHPSWRGLRPDKVPADVKLESPS
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
atggtgaatgaggtgtggccgccgggggcgacgaggggaccgcgtgtcacgctgaccaac
gccgacaaggtgctctacccggccaccggcaccacgaaggccgacgtgttctcctactac
acgaccatcgccgacgtgatgctgccgcacatcgcgggcagggcggtcacccgcaaacgg
tggcccaacggcgtcgatgagccgtcgttcttcgagaagcagctggccagctcggcgccc
gggtggctggagcgtgcaacggtggatcatcgctcgggcagcaccacctatccgatcatc
gagacggcgaccgggctggcatggatcgcgcagcaggcgtcgctggaagtccatgtgccg
caatggcgtttcaccccagacggaaagaccggccctgcaacgcgtttggtgttcgacctc
gacccgggtgaaggggtcacgatgccgcagctgtgcgaggtggccaacgcggtccgcgag
ctgatggacgatatcgggctgacggtctacccactcaccagtggcagcaagggtctgcat
ctctatgcaccgctggccgatccggtcagcagcaacggtgcggtcgtggtcgcccgccga
gtggcccagcagctggagaaaagcatgcccaagctcgtcacggccacgatgaccaaaagc
ctgcgggacggcaaggtcttcctggactggagccagaacagcggctccaagacgacgatc
gcgccgtattccctgcggggccgggagaccccgacggtcgccgcgccccggacgtgggac
gagatcggtgatcccgagctgcggcacctggagtaccacgaggtgctggcgcgggtcgcc
gagcagggcgatctgctggccgccctggacgacgacgtaccgcggcacgaccggctgacg
acatatcgcagcatgcgggatgcggcaaagacacccgagccggtgccggcggccaagccc
gccgtaggggagaacaacacgttcgtcatccaggaacaccatgcgcgacggctgcactac
gacttccggctggagcgtgatggcgtgctggtgtcgtgggcggtgcccaagaatctgccg
gcgaccccggcggtgaaccatctggccgtgcacaccgaggatcacccgctggagtatgcg
acgttcgaggggcagatcccgaagggcgagtacggcgggggcaaggtgatcatctgggat
gccggaacctatgaggccgagaagttccgggactccggcgacaagggcggcgaggtcatc
gtcgatctgcacggccagcgaatctcgggccgctacgcgctgattcagaccaatggcgac
cagtggcttgcgcaccggatgaaggagcagccgacaccacggttacaggattattcgccg
atgctcgcgacgttggggtcggtcgagaagctgaccggggcgcagtacgcgttcgagggg
aagttcgacggctaccggctactggtcgaaatctcgggcggacagctgcgggcgcagtcc
cgcagcgggcgcgacctgactgccgactatccgcaattacgctctctggcggccgatctc
gctgaccatgacgtcatcctcgacggcgaggtggtggccctcgatgcggacggcgtgccg
aacttcggtgagatgcagaaccgggtgcgcgccaccaggatcgagttctgggcgttcgac
atcctgcggctcgacgggcgctcactactgaaggcgaaataccgcgaccgacggaaggtg
ctcgaaaccttcgccgagggaacagatctgatcgtgccgccgctactcgacggcgacggt
ccggaggcgctcgagttctcccgcaagaagaagtgggagggcgtcgtcgccaagaagtgg
gactcgacgtatcagccgggtcggcgatcagcggcgtggatcaaggacaagaactggaat
acccaggaggccgtgatcggcgggtggcgtgagggcaatggcgggcggtccagcggtatc
ggtgcgttgttgctcggcattcccggcgatggtggcctgcggttcgtcggccgggtgggg
accggtttctcggataaggaactgacgaagctcaagaagatcctggagccgttgcacacc
gacgaatcgccctttgccacaccgcttcccagggtcgacgcgaagggcgtcacctatgtg
cggccggagctggtcggcgaggtgcgcttcggtgagtggacgtccgacggccgtctgcgc
cacccgagctggcgcggcctgcggcccgacaaggtgcccgccgacgtgaaactggagtcg
ccgagttag
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