Mizuhopecten yessoensis (Yesso scallop): 110448418
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Entry
110448418 CDS
T05079
Name
(RefSeq) transcription elongation factor SPT5-like
KO
K15172
transcription elongation factor SPT5
Organism
myi
Mizuhopecten yessoensis (Yesso scallop)
Pathway
myi03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
myi00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
110448418
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
myi03021
]
110448418
03019 Messenger RNA biogenesis [BR:
myi03019
]
110448418
Transcription machinery [BR:
myi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
110448418
RNA polymerase I system
110448418
Messenger RNA biogenesis [BR:
myi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
110448418
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW
Spt5-NGN
Spt5_N
CTD
DUF3912
PPV_E1_N
Motif
Other DBs
NCBI-GeneID:
110448418
NCBI-ProteinID:
XP_021350312
LinkDB
All DBs
Position
Unknown
AA seq
1085 aa
AA seq
DB search
MSDDSADSDFSDPESVHSTSGPGSPAGSVSGSERGSRPGSPAGSGSGPGSPGGSGSGSGG
ESGGEGSDVEVGHRRKSVLDDDEEEYDSEEEEDDDGRRKKKKPRLSGFIIDEADVDDEGE
DDEDEWESGAEDLIEAKSNYEGPTAREIEGNRRLEHLFKSQKEDEIEAYLRQKYEDSSFT
ERFGEGAEMSDEITQQGLLPGVKDPNLWLVKCRIGFERETSIQLMRKFVAYQFTDEPLQI
KSVISKESLKGYIYIEAFKQTHVKQAIEGIGNLRMGLWAQQMVPIKEMTDVMKIVREATV
IKAKAWVRLKRGLYKEDLAQVDFVEPAQNIVHLKLIPRVDYTRQRGVMRNAQDTEKRKKK
RRPGQKLFDLDQIRQIGGDVSTDGDFLMFENNRYSRKGFLFKSFAMSAIIAEGIKPTLGE
LEKFEDQPEGAEIDLIPEKSVGDVNHTLIPGDVVEVCEGELVHLQGKVISVDGNKITMMP
KHEDLQDPLEFPCNELKKHFRMGDHVKVLAGRFEGDTGLIVRVEDNMVVLFSDLTMHELK
VLHRDLQLCAEMATGVDSLGQFQFGDLVQLDPQTVGAIVRLEKENFQVLSMHNKVLNVKP
QAVTRKKDTKNAVALDSESNNIQTKDIVKVIDGPHSGRQGEIMHLYRSYGFLMSRMMTEN
GGYFVCRTRHLVLAGGASKQTTTSIGVAGFMSPRLSSPAHPASGGGGTPGSGTPGRGRGG
GGGAFSRRDRELIGQTVRIVQGPFKGYIGIVKDATDSTARVELHSSCKTISVDKTRLTTL
TGGKPSGRSSSYGKTPTYMGGQTPMYGSRTPMYGSQTPLHDGSRTPHYATPGSRTPLHEP
GSMTPGASAWDPANPNTPSRSSEFEDYSFDESSPANYNTPNPATPGYQESTPSPQGPFTP
QTPGTSYSPYGQAAPSPASYQAPSPAGFGSTPSPSGYQPSPSPGGFSSSPSPMGYSPMTP
GAPYTPQTPGMAIDHSMADWHTTEIEVKIRETHDDPNLIYQTGTIRSVTGGMCSVYIAEE
DKTVNVACDHLEPVLPEKGDKAKVILSEERELTGTLLSIDGGEGVIKTDHGEIKMLPIRY
LCKMT
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgatagtgcagacagtgacttctctgaccctgaaagtgtgcacagtaccagt
ggacctggcagtcctgcgggcagcgtgtcaggaagtgagaggggcagcagaccagggagt
ccagctggtagtggtagcggaccaggcagccctggaggaagtggatctgggagtggagga
gagagtgggggggaaggaagtgatgtagaagtaggacatcggaggaagagcgttttggac
gacgatgaagaggagtacgattcggaagaggaagaagatgatgatgggagaaggaagaag
aagaaaccgaggctgtctggtttcatcatcgacgaagctgatgtcgatgatgagggtgag
gatgatgaagatgaatgggagtctggagctgaagatctgattgaggcaaagtctaactat
gagggtccaactgccagagaaatagagggaaaccggagacttgaacacttgttcaagtcg
cagaaggaagacgaaattgaggcatatttgagacagaaatatgaggactcgtccttcaca
gagaggtttggggagggtgcagaaatgtcagatgaaatcacacagcaagggttactccct
ggagtcaaggatcccaatctttggctggtcaagtgtcgtattgggtttgagcgagagact
tccatacagctcatgcgcaaatttgttgcctaccagttcacagacgaaccacttcagata
aaatctgtgatatccaaggaaagcctgaaaggttacatctacattgaggcattcaaacag
actcatgtcaaacaggccatagaaggcattggaaacctccgaatgggactctgggcacaa
cagatggttccgattaaggaaatgacagatgttatgaaaattgtgcgcgaggcgacagtc
atcaaagcgaaggcttgggtgcggctcaaacgtggcctgtataaagaggacctggctcag
gttgattttgtggagccagcccagaacattgtacacttgaagctgataccaagagtcgac
tacacgagacagagaggagtaatgcggaatgcacaggatacagaaaagcggaaaaagaaa
aggagaccaggacagaaattgtttgacctagatcagatcagacaaattggtggtgatgtc
tcgactgatggtgacttcctcatgtttgagaacaacaggtatagtcggaaaggctttctc
ttcaagagctttgctatgtctgccatcatcgcagaaggcatcaaaccaacattgggagag
ctggagaaatttgaggaccaaccggaaggggcagaaatagatttgatcccggagaagtcg
gtgggggatgtaaaccataccctgatccctggagatgtggtggaggtatgtgagggcgag
ttggtacatctccagggtaaggtcatcagtgttgatggtaacaagatcactatgatgccc
aagcacgaggacttacaagatccactcgagtttccctgcaatgagctcaagaaacacttc
aggatgggtgaccatgtgaaagtgttagcgggtcggtttgagggagatacaggccttatt
gtccgtgttgaggataacatggtcgtcctattctcggacctcactatgcatgagctgaag
gtcttgcaccgagacttacagttgtgtgcggaaatggctacaggagtagactccctggga
cagtttcagtttggcgacctcgtccagctcgatccacagacagtgggggcgatcgtgcga
ctggagaaggaaaactttcaggtcctcagcatgcacaacaaggtactgaatgtaaaacca
caagctgtgacgcgaaaaaaagacacgaagaatgcagtggccctggactctgagagcaac
aatatacagaccaaggacattgtcaaggtcatagatgggccacactcgggtcgccaaggg
gagataatgcacttatatagaagttacggcttccttatgtcaagaatgatgacagagaat
ggtggctattttgtgtgtcgaaccagacatttggtattagcaggaggggcgtccaagcaa
actacaacaagtattggtgtggctggctttatgtctccacggctgtcgagcccagcccat
ccagccagcggaggtggtggaacaccaggcagtggtacccctggacgagggcgaggggga
gggggtggagctttcagtcgtcgggaccgtgaacttattggtcaaactgtcaggattgtt
cagggtcctttcaaaggatatattggtatcgtgaaggacgcaacagattcgacggcacgt
gttgagctacattccagctgtaaaacaatctcagtagacaagacccgactcacaacactc
actggtggaaagcccagtggaaggtcctcatcatacggaaagacaccaacatacatgggt
ggacaaacaccaatgtacggatcacgcacaccaatgtatggttctcaaacgccacttcat
gacggcagtcgtactccccactatgccacaccaggaagtcgaacccctctacacgagccg
ggcagtatgacacctggggctagtgcctgggatccagctaatcctaacactcccagcagg
agttctgagtttgaagactacagttttgatgagtcatccccagccaactacaacactccc
aacccagccacaccgggataccaagagagcacacccagtcctcagggaccatttacgccg
cagacccctgggaccagttactctccctacggtcaagctgcaccctctcctgctagctat
caagcacctagtccagctgggtttggcagcaccccaagtcctagtggttaccagccatcc
ccgtcacctgggggtttctccagcagtccttcacccatggggtacagccccatgacccca
ggggcaccctataccccacagacgcccggcatggctatagaccacagtatggcagactgg
cacaccacagagattgaggtcaaaatcagggaaacacacgacgacccaaatcttatctac
cagactggcacaatcagaagtgttacgggtggcatgtgttccgtgtacatcgcagaggaa
gacaagacagtcaatgtggcttgtgatcatttggaacctgtcctgcctgaaaagggtgac
aaggccaaggtaattctgagtgaggagagagagctgaccggtacactcctgagtatagac
ggtggcgagggtgtcataaagaccgaccatggcgagatcaagatgttaccgatacgctac
ctctgtaaaatgacttaa
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integrated database retrieval system
