Mizuhopecten yessoensis (Yesso scallop): 110449248
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Entry
110449248 CDS
T05079
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K06823
collagen type XVIII alpha
Organism
myi
Mizuhopecten yessoensis (Yesso scallop)
Brite
KEGG Orthology (KO) [BR:
myi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
myi04147
]
110449248
00535 Proteoglycans [BR:
myi00535
]
110449248
00536 Glycosaminoglycan binding proteins [BR:
myi00536
]
110449248
Exosome [BR:
myi04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
110449248
Proteoglycans [BR:
myi00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
110449248
Glycosaminoglycan binding proteins [BR:
myi00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110449248
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Endostatin
Collagen_trimer
Laminin_G_3
DUF1554
Motif
Other DBs
NCBI-GeneID:
110449248
NCBI-ProteinID:
XP_021351669
LinkDB
All DBs
Position
Unknown
AA seq
1378 aa
AA seq
DB search
MRILPKCVVLILSVVLATVESQPENNIDLLTAVGVPSVTNGVGYETGITGYPAFSFNERA
FIRKSAAEIFGAALKYRNFALTLAVKPTRREGGFLFSVKNPYNTVVIFGVLIEPSTLPRR
DNLVFYYTENAQFQNRVPSNVLANFTVDSLYNKWTELGIKVEDSTATLYVNCERTESRRI
NRNSARLLAIEPGSSFYIAQGGPNFEGDQFVGAINELKIHEDPREAERDCSESISGSGGS
SGDDEDDTRTPSPLPPVTDIDEIVTGNGEKGDQGEMGERGPQGLKGQKGDQGLRGLPGPM
PTIPPPPPQPPSLKGDKGDMGEKGDRGEVGVPGFPGQKGEMGVEGSDGLPGLPGLSGDKG
DMGVQGMPGNPGIGTAGQKGDQGDPAIVDHDEIASILLSMSEFNIKGEPGVKGGKGMAGP
AGPEGPEGRDGYPGAPGDPGRIGEPGQMGPKGEQGIPGMGIPGSDGLPGPLGPTGPIGLT
GPQGKPGPPGPPGSPVVVEGSGEDVLGEMGPQGPQGERGETGAVGPMGIQGPVGPMGLPG
VPGLHGAKGEPGVFAYNMSDLIGPAGKPGLAGTPGLPGITGAPGVDGQRGPLGPKGDRGE
FIQIANTKRFISCSENYLYYYNKIQRACDKLCYFLFKGSGGGSCECEGVVGPMGPAGPTG
PGGVPGLPGVDGAQGPPGNRGIAGVAGRNGEMGLKGDQGADGRDGEPGNPGPQGRAGTAG
LPGTPGIPGSDGTPGMKGATGAPGVGTPGPMGPSGINGQNGTPGPPGPPGPPGPAVTVEG
VGSGEMGTIDFEGGIAGPKGERGETGIVGPRGMDGLPGKMGPVGPPGPAGPLGEPGFPGQ
MGPKGEMGPAGNDGRDGATGTPGEPGSVGMPGLPGSEGPSGPAGPTGASGPPGPPGPRGS
GGDGEALILGGEKGEMGEAGTPGRDGAPGEPGQPGPIGPRGFRGSKGAIGMPGLMGRRGW
RGRKGERGYGLRGPKGEPGVQGLGVIGGAISSGTKGEPGERGLPGVPGSSGRDGNNGRPG
VRGRDGDDGTKGEKGEAGREGRVGPRGPPGPVSIGGYGESTFEGARGPAGPPGPQGRPGI
PGTPGTNGGPANLSGGSSGAVVFNAASELMTVAHSLPPGTFVYINNEEKVYIRVNNGFRL
IQSEVVELGQFLPLPTATTAAPTSAPAPFRIRPKTTEAPYLPPSDSGRLINDRGAKRLYL
FALNKPYAGNIRGIRGADYECYKESREAGISIGRKTFRALLSSSTQDFRSIVPLARDQLI
PIVNKRDEILFDSWEQMLNGNGGTFNTSTPIYSFDGHNVRTSSRWKQKYVWHGSDRQGRM
SSKLTCQGWHSGFRMSEGLASNLLEGKMVETNKFSCNNEFVVLCIQNTSERMRKRRRK
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
atgcggattttacccaaatgtgtggtgctcattctctctgttgtgttagcgacggtggaa
tcccaaccagaaaacaacattgacttactgactgctgttggggttccctctgtgactaat
ggggtaggctacgagacaggaattactggctacccagcattttctttcaatgaaagagca
tttatacgcaaaagtgctgcagaaatatttggtgcagccctaaaatatcggaacttcgct
ttaactttagccgtgaaaccaacacgaagagaaggaggttttcttttttctgtgaaaaac
ccatataacactgtagttatttttggtgttttgatagaaccatcaacattaccaagaagg
gataatctagttttttattacacggaaaatgcccaatttcaaaatcgggtgccatcaaac
gtgttagctaattttacagtggattcactttataataagtggacagaactgggaattaaa
gtcgaagacagtacagccacgctttacgtaaattgtgaaagaacagaaagcaggcggatc
aacagaaatagcgcacgtctgttagccattgaaccaggatcgtcattctacattgcgcag
ggcggacctaacttcgaaggagatcagtttgttggtgctataaacgaattaaaaatacat
gaagatcctagggaagcggaacgagattgctcagagtccatatctggatcaggcgggtct
tcaggagatgatgaagatgatacgaggacaccgtcaccactaccaccggtcacagatatt
gatgaaattgtaactggaaatggagaaaagggagatcagggcgagatgggagaacgtgga
ccacagggtttgaagggtcaaaagggagatcagggactgaggggtctgcctggtccaatg
cctacaataccaccccctccaccacagccaccatctcttaagggagacaagggtgacatg
ggagagaagggagacagaggagaagttggtgttcccgggtttccaggacagaagggagag
atgggcgttgaaggttcagatgggctacctggtttacctgggttatctggagacaaagga
gacatgggggtccagggcatgccaggaaacccaggcattggaacagctggacagaagggt
gaccaaggtgatccggccattgtagaccacgacgagattgcctcaattttacttagcatg
tctgaattcaacatcaagggggagcctggagtgaaaggaggcaaggggatggcaggtcct
gctggtcccgaggggcctgaaggcagagatgggtacccaggggcccctggagatccagga
agaatcggggagcctggacaaatgggaccaaagggagaacaaggtatcccaggaatggga
ataccagggtctgatggcttaccaggtcccttgggacccacaggacctattggtctcaca
ggcccccagggtaagccaggaccacctgggcccccagggtcacctgtggtagttgaagga
tcaggagaagatgttttgggagagatgggacctcagggaccccaaggagaacgtggtgag
actggtgcagttggacctatgggaatccaaggccctgtcggacccatgggtcttcctggt
gttccaggattgcatggtgctaaaggagagcctggtgtctttgcctacaatatgtcagac
ttgattggtcctgcgggaaaacctggtcttgctggaacacccggtttacctggtataact
ggtgcaccaggggtagacggacaaagagggccattgggtcccaaaggagataggggagaa
tttatccagatagcaaatacaaaacgttttatttcatgttctgaaaattacttgtattac
tataacaagattcaacgggcatgtgataaattgtgttattttctcttcaaggggtctggt
ggtggtagctgtgaatgtgagggagttgtcggccccatgggacctgctggacccactggg
cctggtggagttccgggactgcctggtgttgatggggcccaaggtcctcctgggaaccga
gggattgcaggagtagcgggcagaaatggagaaatggggctgaagggcgatcagggagct
gatggtagggatggagagccaggtaaccccgggccacagggtagggcaggtactgctgga
cttccaggaactcccggcattcctggctcagacggaaccccaggaatgaagggtgctaca
ggtgctcctggtgtaggtacacctggacctatgggaccgtctggaataaacggtcagaat
ggaacccccggaccacctggaccccccggaccccctgggcccgctgtcacagtggaaggg
gtcggatctggggagatgggtactattgactttgaaggaggaatagctggtcctaagggg
gagaggggagagactggtattgttggtccaagaggtatggatggcctcccaggcaagatg
ggccctgttggacccccgggacctgccggtcctttaggtgaacctggcttcccaggacaa
atgggtcccaagggagaaatgggccctgctggtaatgacgggagggatggtgccacagga
actccaggagaaccagggagcgtaggcatgccaggacttccaggcagcgaaggaccctca
ggacctgctggacccactggggccagtggtccgcctgggcctccaggccccagaggatct
ggtggagatggagaggcactgatcttgggcggtgagaagggagagatgggagaggcaggt
accccaggacgagatggggctcccggggagccaggtcaacctgggcccattggcccgcga
ggtttcagagggtccaagggagctattggcatgcctggacttatgggtcgtcggggatgg
agaggcaggaaaggtgaacgtggctatggacttcgcggacccaagggagaaccaggagta
caaggtttaggtgtaattggaggagcaatcagttcaggcacgaagggtgagccaggtgag
agaggactcccaggtgtcccagggagttcaggacgtgacggtaataatggccgaccggga
gttagaggcagagatggtgatgatggaacaaaaggagaaaagggagaagcaggacgagag
ggacgagtaggaccccgtggacccccaggaccggtgagcattggaggatatggggagtcc
acgtttgagggagccagaggacctgctggaccacccggaccacagggccgaccaggaatc
cctgggactccagggaccaatggtggaccagccaatttgtcaggagggtcatcgggagct
gttgtattcaacgccgccagtgaactaatgactgttgcccatagcttacctccagggact
tttgtctacatcaacaacgaggagaaagtttacatccgtgttaataatggcttcaggttg
atacagagcgaggtggtggagttgggacagttcctgcccttaccgacagcaaccacagct
gcacccaccagcgctccggcaccattccgaatcaggcccaagaccaccgaggcaccatac
ttacctccctccgactcgggcagactcatcaatgacaggggtgccaagaggctatacctg
tttgctctaaataagccttatgctggaaacattcgaggaatccgtggggctgactacgaa
tgttacaaagagtccagagaagctggcatttccattggaaggaagacattccgggcgcta
ttgtccagctccactcaagattttagatcaatcgtaccattagcgagggaccaattgata
cctattgtcaataagcgtgacgaaatactgtttgattcatgggaacaaatgttaaatggc
aatggtggaaccttcaacacttcgactcctatctactcgtttgacggtcacaatgttcgg
accagtagtcgatggaaacagaaatacgtttggcatggatccgatcgtcaaggtcgaatg
agtagcaagttgacttgtcaaggctggcattcgggattcaggatgtccgaaggcttggca
tctaacttgctggaaggcaagatggtggaaacaaacaaattttcttgtaacaacgagttt
gttgtactttgtatccaaaatacaagcgaaagaatgaggaagaggaggaggaagtaa
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