Mizuhopecten yessoensis (Yesso scallop): 110450409
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Entry
110450409 CDS
T05079
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
myi
Mizuhopecten yessoensis (Yesso scallop)
Pathway
myi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
myi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110450409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
myi03041
]
110450409
Enzymes [BR:
myi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
110450409
Spliceosome [BR:
myi03041
]
Complex A
U2 snRNP components
U2 related factors
110450409
Complex B
110450409
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
110450409
NCBI-ProteinID:
XP_021353571
LinkDB
All DBs
Position
Unknown
AA seq
1022 aa
AA seq
DB search
MPKDSRSYRKRSRSRSGSRERKRYRSRSKSTDRSRRSRSRDRLRRSRSRERDRDRSKRSR
SRDRRRSRSRDRRRSRSRERDRRRRSRSRDRDRDRRSRSRERKRDKRSRSKTPDKSKTKG
ETSPERKLQFREGELSVRDEPLDKEEEQKRLEMEMQKRRERIEHWRAERKKTKELAPINI
APPTKIWSLEDDEDDDDIVDNGSKDDDDELDSLDAYMQNIEDKPNRDKEQKSGIKTENGT
NAETSSTAAVGKVTMITGVVKTKTDTSLQKGELMLNNVDAMEYSSEEEEEDLDSTMAKIK
NTKKELLVVDHTRIYYAPFRKDFYVEVPEIRKLTAEEVDAYRLELEDIKVRGKNCPKPIK
SWAQCGCSKKVMEAFKRHDYDKPTPIQAQAIPAIMSGKDLIGIAKTGSGKTIAFLIPMFR
HIKDQPELDEDDGPIAVVMTPTRELAMQITTECKKFAKPLGLRAVCVYGGTGISEQIAEL
KRGCEIIVCTPGRMIDMLSANNGRVTNLRRCTYIVLDEADRMFDMGFEPQVMKIVDNIRP
DRQTVMFSATFPRQMEALARKILNKPIEVQVGGRSVVCKDVEQHVIVIDEDKKFLKLLEL
LGIYQEKGSVLVFVDKQEHADDLMKDLMKHSYPCLSLHGAIDQYDRDSTISDFKNGNISL
LVATSVAARGLDVRHLILVVNYDCTNHYEDYVHRCGRTGRAGNKGFAYTFITPEQERYSG
DILKALEMSGGNVPADLERLWNEYKERAKAEGRTVKSSSGFRGKGFKFDETESHLADERK
KAQKAALGLQDSDDEDSSMDIDQQIEDMFASVKRVTDVAKPTVPSQTPQPMAAAPTVSNQ
QKLELAKRLAAKINMAKKIGPDAQDITQQAAKSILTGDGAAPQVASKTIAEQMAEKINAK
LGYRPQTEEDEGADTNAETFKRYEEELEINDFPQTARWKVTSKEALAQICEYSEAGITVR
GTYFLPGKEVKEGERKLYLAIEATSDMAIQKAKKEITRLIKEELIRLQTSYQPMNKGRYK
VV
NT seq
3069 nt
NT seq
+upstream
nt +downstream
nt
atgccgaaggatagcagatcatacaggaaaaggtctagatcaagaagtggatcaagagaa
aggaaacgttacagaagtaggtccaaaagcactgatcgatcacgaagatcaaggtcaaga
gacagattaagacgatcaagatccagggaaagagatagggacaggtctaagagatccagg
tcacgggataggcgaaggtcaagatcaagggacagaagacggtcaaggagtcgagagaga
gataggagaaggaggtcaaggtcacgggatagggacagagatcgtagatcacgatcaaga
gaacggaagagagacaagaggtcacgttctaaaacacctgataaatccaaaacaaagggg
gagacatcaccagaaagaaaattgcagtttagagagggagaattaagcgtgagagatgaa
ccacttgacaaggaggaggaacagaaaagactggagatggaaatgcaaaaacgaagagaa
agaatagagcattggagagcagaaaggaaaaagaccaaagagcttgcccctattaatatt
gcccctcccacaaagatttggagtttagaagatgacgaagacgatgatgacatagttgat
aatgggtcaaaggatgacgatgatgaactggactctttggatgcctatatgcagaatatt
gaggacaaaccaaaccgagataaggaacagaaatctggcatcaaaacagaaaacggtaca
aatgccgagaccagttctactgcggcagtgggtaaggtgaccatgattacaggcgtggtg
aaaacaaaaactgacacatcgctacaaaaaggagaacttatgttaaacaatgtggatgca
atggagtattcatcagaagaggaggaagaggatttagactcgactatggcaaaaattaaa
aacactaaaaaggaactgttggtcgtggaccatacaaggatttactatgctccattccgc
aaggatttctacgtcgaagttccagaaatacgaaagctgacagcagaagaggttgatgcc
taccgacttgaactagaggacattaaagtacgtggtaaaaactgtcccaaaccaattaag
tcctgggcacaatgtggctgcagcaaaaaagtcatggaagctttcaagagacatgattat
gacaaacccacaccaatccaagcacaagccattcctgccatcatgagtggaaaggacctg
atcggtattgccaagacaggcagtggtaaaaccatagccttccttatcccaatgttccgt
cacatcaaggaccaaccagaactggatgaggatgatggacctatagctgttgtgatgacc
cctaccagagaacttgccatgcagattacaacagagtgtaagaagtttgccaaaccactg
ggccttcgtgctgtttgtgtgtacgggggaactggtatctcggaacagattgcagaactc
aagcgtggctgtgagatcatcgtctgtactcccggacgtatgatagacatgttgtcggcc
aataatgggcgagtgactaaccttcggcggtgcacctacattgtgttggatgaagcagac
cgaatgtttgacatgggtttcgaacctcaggtgatgaaaatagtggacaatattcgacct
gaccgtcagacggtgatgttctcagccactttcccgcgacagatggaggccctagccagg
aagatactgaacaaacccatcgaggtgcaggtgggtggccgcagtgtggtgtgcaaggac
gtagaacagcatgttattgtcattgatgaggacaagaaattcctgaagctgcttgagctg
ctgggtatttaccaggagaagggcagtgtgctggtgtttgtagacaagcaggaacatgcg
gacgacctgatgaaggatctgatgaagcactcctacccctgtctctctctacatggtgcc
atcgaccagtatgaccgtgacagcacaatcagcgacttcaagaacggcaacattagtcta
ctggtggcgacttctgtggctgcccgaggtttggatgtacgacatctgatactggtggtt
aattatgactgtaccaaccactacgaggactatgtacacagatgtggccggacaggaagg
gcaggcaacaaaggttttgcttacaccttcatcaccccagagcaggagcgatattctgga
gacattctgaaggccctggagatgtcaggaggtaatgtccctgctgaccttgaacgtctg
tggaatgaatacaaggaaagggccaaggctgagggccggactgtgaagagctccagtgga
ttcaggggtaaagggttcaagtttgatgaaactgaatctcatctagcagatgagagaaag
aaagcacagaaggcagcccttggtctccaggactctgacgatgaggatagcagtatggat
attgaccagcagattgaggatatgtttgccagtgttaagagagtcactgatgtggctaag
cctacagtaccttcccagactccgcaaccgatggctgcagcaccaacagtctccaaccaa
caaaagcttgagctggctaaacgcttggctgccaagatcaacatggcgaagaagataggg
ccagacgcccaggatatcactcagcaggctgccaagtccatcttaactggagacggagct
gctccacaagtggcctcaaagacgatagcagaacaaatggcagagaagataaatgccaag
cttggataccgaccacaaacagaagaggatgagggtgcagacactaatgcggagactttc
aaacgctacgaggaagagctggagatcaatgacttcccacagactgcacgctggaaagtt
acgtcaaaggaggctcttgcccagatctgcgagtactcggaagctgggatcacggtgaga
ggaacatatttcttacctggcaaagaagtgaaggagggtgagaggaaactgtacctagct
atagaggctactagtgatatggctatacagaaggccaagaaggagataacgcgtctcatc
aaggaagagctcatcaggctgcaaacgtcataccagccaatgaataagggacgctacaag
gttgtatag
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