Mizuhopecten yessoensis (Yesso scallop): 110455499
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Entry
110455499 CDS
T05079
Name
(RefSeq) uncharacterized protein LOC110455499 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
myi
Mizuhopecten yessoensis (Yesso scallop)
Pathway
myi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
myi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
110455499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
myi03021
]
110455499
03019 Messenger RNA biogenesis [BR:
myi03019
]
110455499
Transcription machinery [BR:
myi03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
110455499
Messenger RNA biogenesis [BR:
myi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
110455499
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
Pcf11_helical
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
110455499
NCBI-ProteinID:
XP_021361344
LinkDB
All DBs
Position
Unknown
AA seq
1939 aa
AA seq
DB search
MENEVINDYQSSLVDLTCNSKPLINMLTMLAEENEQYATHIVEVIETHINQASEKKKLPS
LYLIDSIVKNLPKTTYPSLFSHNIVSVFCGMFEKVDEKTRQCMFKVRQTWNEIFPNRKLY
AVDVRVNLVDPAWPVTAQPPVESSIHVNPKFLAAKQQKEEEEILEDDDLIIHDTVTEEQE
ALMRQQLIAKQQELLKLQQQRLELELKETKAKLDQQKQVGSQLNAGKSKHLEAADTMDPV
DNLNPPIHPTPKSTLETTKPLGTSAPSRPTTRDPRLASRDPRSAGRDPRLKGKGVADSKT
SEVSQSDSTPAVVQNSEVVSVPTSIVPTSLMAYPPPPLPSMMAPAGMMPPGMIPGYMPPV
MNMPPQTNLGRPIVLPGMLPFPMPTAQMGMSIPPPPVVNINNQAIPNKDTQVAKFGHQKS
NHDKSNGKVSKSSSSQQASQKSSTDHKSKDVKESSRSSRDIRADRKHNDKRDTSSSTKSS
RHSDSKRLSVEKDRDQKDKDNKDRKSSSSRRESPRTSYSSASSSKEEKSKTRSDSKSESK
SKKSDKDDTRHKRSSRDSDEDSRKSNRSDDSDDRRRENTRSTRSSKARTRSRSPVKSKSP
EERKSKTKPKEKTEKSEKTEKKSTKEESKSKKSSPVKNSKKTVKEEKGKMALETEKCENV
IVKQEPVELNTDDNVLSNEEKAVEIKTEKVDEMAVEPPEQDMPKVAPVEDMDVDDRQVHP
QAQESLKREHSRKIEESDVTEEGQSSSKKPRLEEEPDQSTAKVMDEDISSLFGSEDQDYR
SQRDGPGPPMKSPFHDKWMKFRENHPGDFKYELDLEKEREIAAHDVDHRRASSESESVKD
VDHRYKGVPQDIDLRSSFTHKSLDQDARDYDSRNSAKPVHIPAALQLDHREEILEQIEHR
RRSGELSHDMHQELLHQLSKLDNVQRQQNRLNHPNDRRGPDSPVLDTDRRGRDTWQYRSP
LKDPPQGRSYDRRPDIQRTHGNREGPLKDFDDRYGPEPDLERRRTPPLDHSGPLRDRNNR
DIDSRHGRDHGFDDRRRPPHNMDGPNRDFDNRLGPPRDYDRRREAPMDTNRPPRDWQGPD
DRLRAGPGRDHKRDWNYNENKGRGWHNPNHWKDDPAFREDGPPGRYNDRPPRYNPDERGP
PDGPHSMNGPYNDRGPQMGPPRQQPFIKQQQSSDPRWKRIVGYKGPEENEEFVIDGRPYG
IAVGQPARKIRVAGRTIEVFADPNERAIRVDGVIVYRFGDMVRDVKLGRLNHKIFYHGLP
RFIWIDGIMRELRVDAPPKILSIKDKEHTMRIDGRDLMILVDNKEMGVVGGPPRYVFIDN
NRCEFRFDPPPRKILIDGTMSELKLDRAIPCVVINNKKRGIRFDGPPREIIVDNINYVVP
VDDCVKIRINNRPHYLAFGGPAHEVILDGKWFEVKFGGPAKEISLGNRVIHVRLEGPPPE
VKILNEIIEEPESAPTRYGPPKAVQDLRPDGLPQHLQPSGPGQQGPPALMMGGPMDQQPM
MQGMMPPGQMMMNSIQSQPVMSQPGQPTYSGMMPPQNPMLPTQMPGMMPAVSGAMTNVFP
GQAPVQAPNPLMNVSSLLQRLMATGIIPPKDTEKNDNTETTETPKPPEIKTSKNDNTKTG
SINEKDFIKPVFKQVKIKDVPDLTELKTEKLKQLHEGVIQSLFSGIQCSACGQRFSAQQT
ERYREHLDWHFRQNRRDKDDAKVTKYRRWYYDVSDWITYEEIDESEGKGRSSIFEKMLAI
ATTANLANVPQDTVVNAPEGSNIIHCPPATGEDKGDVCEICGDPFEQFWNEDQEEWHLRD
AIRVESKTYHPICYEDEKEGSILEPTPTPVKAPTENPLVKQIKEESNPIILQIRQELGEL
PVSAIDMSKVKVNKTKLFIPEDDDEEEPAPAAEIESVKTRDSEEESVPERDSVMEIIKSV
VKTEPPSDVDTSVKTESGL
NT seq
5820 nt
NT seq
+upstream
nt +downstream
nt
atggagaacgaagttatcaacgactaccagtcatcccttgtggatctgacgtgcaacagc
aagccattgatcaacatgctgaccatgctggcggaagaaaacgagcaatatgcgacgcac
attgttgaagtgatcgaaacgcatataaatcaggcgagtgaaaagaagaagctgccttca
ctgtatctaatagactccattgtcaagaatttgcccaagacaacgtacccaagtcttttc
tctcacaacattgtctcagtgttctgtggcatgtttgaaaaggtggatgagaaaaccaga
caatgtatgttcaaagtacgacagacctggaacgaaatatttccaaataggaaactatat
gcagtagatgtacgagtgaatctggtggacccagcctggccagtcactgcccagccccct
gtcgagtccagcatccatgtcaacccaaagttcctggctgcaaagcaacagaaagaagaa
gaggagatcttggaggacgatgatttaatcatccatgacacggtaactgaggaacaagaa
gctctgatgcgacaacaactaatagctaagcaacaggagctgctcaagcttcaacagcag
cgtctggagctagagctgaaggagacaaaggccaaacttgatcagcaaaaacaggtaggc
tcacagctcaatgctggtaaatcgaagcatctggaggctgcagacaccatggatccagtt
gataatttgaacccaccaatccatcccaccccaaagtctacacttgagacaaccaaaccc
cttgggacaagtgccccaagtcgtccaaccactagggacccacgtctggcgtccagggat
ccccgctctgccggcagagaccctcgcctcaaaggcaagggtgttgctgattctaaaacc
tccgaagtttctcagtcagacagtacccctgctgttgttcagaattccgaagttgtttca
gtacccacttcaatagtacctacttctctgatggcatatccgccacctcccttgcccagc
atgatggcgcctgctggtatgatgccacctggaatgattccaggatacatgccaccagtt
atgaatatgccgccacagacaaacctaggacgacccatagtgctgccaggcatgcttccc
tttcccatgccaacagctcagatgggtatgtctatccctccaccgcctgtggtcaatatc
aacaatcaggccatcccaaacaaggacactcaggttgctaaatttggtcaccaaaaatca
aatcatgacaaatctaatggcaaagtgagcaagagctcttcatcacaacaagcctctcag
aaatccagtacagaccacaagtccaaggatgtgaaggagagttctaggtcaagccgggac
atacgtgctgaccgaaaacacaacgataaacgtgataccagcagtagtactaaaagtagt
agacattctgactcaaaacgcttgtctgtggagaaagatcgtgatcaaaaagataaagat
aacaaagacaggaagtcatcttcaagtcggcgagaaagtcctagaacaagctacagtagt
gctagcagttcaaaagaggaaaagtcaaaaacaagaagtgactcaaaaagtgaatcaaag
tctaaaaaaagtgacaaggatgatacacgacataagaggagcagtagagattctgatgaa
gacagcaggaagagtaatcgcagtgatgactctgatgaccggagacgtgaaaatacacgc
tctacacgaagttcgaaagctagaacaagatctaggtcaccagtgaaatcaaaatctcct
gaggaaagaaagtcaaaaactaaaccaaaggagaaaactgaaaaatcagagaaaacagaa
aaaaaatctacaaaggaagaaagcaaaagtaaaaaatcatctcctgttaaaaacagtaaa
aagacagtgaaagaagaaaaaggaaagatggcattagagactgaaaaatgtgaaaatgtg
atagttaagcaagagcctgtggagttgaatacagatgataacgttttgtccaacgaagaa
aaggctgtggagataaaaactgaaaaggtggatgaaatggctgtggaacctccagaacag
gacatgccaaaagtggccccagttgaggacatggacgttgatgatagacaggtgcaccct
caagctcaagagagcctgaagcgtgaacactcgagaaaaattgaggagagtgatgtgaca
gaggaggggcaaagttcaagtaagaaacctcgcctggaagaggagccagatcaaagtact
gctaaagtcatggacgaggatatcagttctttgtttgggtctgaagaccaagactacaga
agccaaagggatggtcctggtcctcccatgaaaagtccctttcatgataagtggatgaaa
tttcgggaaaaccatcctggtgactttaaatatgagcttgatctggaaaaagagcgtgaa
atagctgcccatgatgtggaccaccgaagagcaagctcagaatctgaatctgtgaaggat
gtggaccacagatataaaggagttccacaggacatagatctacggtcatcctttactcac
aaatcattggaccaggatgcaagagattacgacagccgaaattctgccaaacctgtccat
atacctgcagccctgcaactcgaccatcgagaagagattcttgaacagattgagcatcgt
cggaggtccggggaattaagtcatgatatgcatcaagagttgcttcaccagctatccaag
ctagataatgtacaacgccagcaaaaccgactcaatcaccccaatgatagacgggggcca
gacagtcctgtccttgacacagaccgccgtggcagagatacttggcagtataggtcgcca
ctcaaagacccaccccagggcaggtcttatgataggcgaccagatatccagagaacccat
ggaaacagagaaggacctctcaaggactttgatgacagatatggacctgagccagatttg
gagaggagacgaacacctcctttagatcattctggtcctctccgagatagaaataacaga
gatatagatagtcgccacggtcgtgatcatggctttgatgataggcgtagaccacctcat
aatatggatgggcccaacagggactttgacaatagacttggacctccaagggattatgat
agacgacgtgaggctccaatggacaccaacagacctcctagggactggcagggaccagat
gaccgcctgagggctggaccaggccgtgatcataagcgggattggaattataatgaaaat
aaaggcaggggatggcacaatccgaaccactggaaagatgatccagccttcagggaggat
ggtcctccaggacgctacaatgaccgtccacctaggtataaccctgatgaaagaggtcca
ccagatgggccacatagcatgaatgggccttacaatgacagagggccacagatgggtcca
cctcgccagcaaccattcataaagcaacaacagtcctctgatcccaggtggaagaggatt
gtaggctataagggacctgaggagaatgaggagtttgtgattgatggtcgaccatatgga
attgctgtgggtcaaccagcaaggaagattagggttgcgggacgcactattgaagttttc
gctgatccaaatgagcgggcaatacgtgttgatggtgttatcgtatacaggtttggggat
atggtcagagacgttaaacttggtcgcttgaatcacaagatattctatcatggcctgccc
cgctttatctggattgatggcattatgagggagctgcgtgttgatgcaccacctaaaatt
ctcagtattaaggacaaggagcacacaatgcgtattgatgggcgtgatcttatgatccta
gtagacaataaagaaatgggagtagtaggaggaccgcctagatatgtctttattgacaat
aaccgctgtgagttcagatttgatcctccgcctcgcaagatcttaattgatggcacgatg
agtgaactgaagctagacagggctattccctgtgttgtgatcaacaacaagaagagggga
atacgctttgatgggcctcctagggagatcattgtggacaatatcaattatgttgtacct
gttgatgactgtgttaaaatacgcatcaacaacagaccgcattacctggcatttggaggg
cctgctcatgaagtgatattagatggaaagtggtttgaggtgaaatttggcggaccagcc
aaagagatctccttgggcaaccgtgttatacatgtaagattagaagggcctccaccagaa
gttaagattttaaatgaaattattgaagaacctgaatctgcaccaacccgatatgggccc
cctaaggcagtgcaagatcttagaccggatggccttcctcaacacctgcagccttctggg
cctggacaacaagggccaccagcgctgatgatgggcggccctatggaccaacagccaatg
atgcaaggaatgatgccgccaggacagatgatgatgaactccatccaatcgcaaccagtg
atgtcccagccagggcaaccaacatacagtggcatgatgccgccacagaaccccatgctt
cctacacaaatgccaggtatgatgcctgctgtgtctggagcaatgaccaatgttttccct
ggtcaggcaccagtccaagcaccaaatcctctgatgaatgtaagctcgctgcttcagcgg
ctaatggctactggtattatcccacccaaggacactgagaaaaacgacaacaccgaaact
acagaaacacctaaaccacctgagataaaaaccagcaaaaatgataatacaaagactggc
agcataaatgagaaagatttcatcaaaccggtgtttaaacaagtcaagattaaagatgta
cccgatctgacagaactgaagacagagaaactgaaacagttacatgagggtgtgatacag
agcctgttttctggtatccagtgctcagcatgtggtcagcgtttctccgcccagcagact
gagagatacagggaacatttagactggcatttccgacagaacagacgggacaaagatgat
gccaaggtcactaagtacagacgctggtattatgatgtgtcggattggataacatatgaa
gaaatagatgaatctgaaggaaaaggtcgcagttccatatttgagaagatgctggctata
gctaccacagcaaatttagcaaacgtgccccaagatacggttgtgaatgccccagagggc
tctaacatcatccactgtcctccagcaacgggggaggacaagggagatgtgtgtgagatt
tgtggagatccatttgagcagttctggaatgaagaccaggaagagtggcacctgcgggat
gccattcgtgtcgaaagcaagacataccatccaatctgttacgaagatgagaaagagggc
agtatattggagccaacacctactcccgtcaaggctcccacagaaaaccctctggtaaaa
cagatcaaggaggagtccaacccgatcatcttacagattagacaggagctgggtgagctg
cctgtctctgccatcgacatgagcaaggtcaaggtaaacaagaccaagctgtttattcct
gaagatgatgatgaggaagaaccagcaccagcagcagagattgagtctgtcaaaacaagg
gacagcgaggaggagtcggtcccagaaagggacagcgttatggagatcatcaagtccgtg
gtgaaaactgagcctccctctgatgtcgatacttcagtgaagacagaatcaggactatga
DBGET
integrated database retrieval system
