KEGG   Mycobacterium sp. NRRL B-3805: MyAD_09935Help
Entry
MyAD_09935        CDS       T05013                                 

Gene name
ligB
Definition
(GenBank) ATP-dependent DNA ligase
  KO
K10747  
DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
myn  Mycobacterium sp. NRRL B-3805
Pathway
DNA replication
Base excision repair
Nucleotide excision repair
Mismatch repair
Brite
KEGG Orthology (KO) [BR:myn00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    MyAD_09935 (ligB)
   03410 Base excision repair
    MyAD_09935 (ligB)
   03420 Nucleotide excision repair
    MyAD_09935 (ligB)
   03430 Mismatch repair
    MyAD_09935 (ligB)
Enzymes [BR:myn01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MyAD_09935 (ligB)
    6.5.1.6  DNA ligase (ATP or NAD+)
     MyAD_09935 (ligB)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MyAD_09935 (ligB)
DNA replication proteins [BR:myn03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    MyAD_09935 (ligB)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     MyAD_09935 (ligB)
DNA repair and recombination proteins [BR:myn03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MyAD_09935 (ligB)
   NER (nucleotide excision repair)
    Other NER factors
     MyAD_09935 (ligB)
   MMR (mismatch exicision repair)
    Other MMR factors
     MyAD_09935 (ligB)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Other DBs
NCBI-ProteinID: 
LinkDB All DBs
Position
complement(2132480..2134000)
Genome map
AA seq 506 aa AA seqDB search
MQLAEIAAASDDIGATSSRTAKVGLVAAALRRVDPDEISVVVTWLSGELPQRQIGVGWAG
LRDLPPPAGDATLTVAAVHAMLTEIKDIAGKGSKGRRAQRVLDLFAAATETEQQFLRRLL
SGELRQGALAGVMADAVAKAAGLPAAAVRRAAMLAGDLSAVAVSAITDGDIGRFTLRVGR
PVSPMLAQTATGVAEALDKLDGEAAFETKLDGARVQIHRAGDRVTIYTRTLDDVTERLPE
VVDAALALPVTDLIADAEAIALRPDGRPHRFQVTASRFGSRSAAARAEPLSVFFFDLLHR
DGVDLLDLPLTDRMAALDEVVPAAQRMQRLVTTDPAAAHAFLETTLAAGHEGVMAKAPRA
PYEAGRRGSGWLKVKPVHTLDLVVLAVEWGSGRRTGTLSNIHLGARDPDTGEFVMLGKTF
KGMTDEMLAWQTRRFTELAVEGTDGGVVRVRPEQVVEIAIDGVQASSRYPAGMALRFARV
VRYRDDKPAAQADTVHTVRELFERSG
NT seq 1521 nt NT seq  +upstreamnt  +downstreamnt
gtgcaactcgcagagatcgccgccgcgtcggacgatatcggtgcgacatcgtcgcggacg
gccaaggtcggcttggtcgccgcagcactgcgacgcgtagacccggatgagatctccgtc
gtggtgacctggttgtccggcgaactgccccagcgccagatcggcgtcgggtgggcgggt
ctgcgcgatctgcccccaccggccggcgatgccacgctgaccgtcgccgcggtgcacgcc
atgctgaccgagatcaaagacatcgcaggaaaggggtccaaggggcggcgggcccagcgg
gtgctggacctgttcgccgccgccaccgagaccgaacagcaattcctgcgtaggttgttg
tccggggagctgcgccagggcgcgctcgccggagtgatggccgatgcggtcgccaaggcc
gccggcttacccgccgcggcggtccgccgcgccgccatgctggccggggatctttccgcg
gtcgcggtctcggcgatcaccgatggcgatatcggccgcttcaccctgcgcgtcggacgg
ccggtctcccccatgctggcccaaacggcgacaggtgtcgccgaggctctggacaaactt
gacggcgaggccgccttcgagacgaagctggacggcgcgcgggtgcagatccaccgcgcc
ggagaccgggtcacgatctacacccggacgctcgacgatgtcaccgagcggttgcccgag
gtggtcgacgccgcgctcgcgctgccggtcaccgacctcatcgccgatgccgaagccatc
gcgctgcggcccgacgggcgtccgcatcgcttccaggtgaccgcttcccgcttcggcagc
cgctcggcggccgcgcgtgcggagccgctgtcggtgttcttcttcgatctgctgcaccgc
gatggtgtcgatctgttggatctgccgctgaccgaccggatggccgcgctggatgaggtg
gtgccggcggcgcaacggatgcagcgactggtcaccaccgacccggccgccgcgcacgcg
ttcctggagacgacgctggccgcgggccatgagggtgtgatggccaaggcgccgcgcgca
ccgtatgaggcgggccgccgcgggtccggctggttgaaggtcaagccggtgcacaccctg
gatctggtggtgctggcggtcgaatggggctccgggcggcgcaccggcacgttgtccaac
attcatctcggtgcccgcgacccggacaccggcgaattcgtgatgttgggcaagacattc
aagggaatgaccgacgagatgctggcctggcagacgaggcgcttcaccgagctggcggtc
gagggcaccgacggcggcgtggtgcgggtgcggcccgagcaggtcgtcgagatcgcgatc
gacggtgtccaggcgtcctcgcgctacccggctgggatggccctgcggttcgcgcgcgtc
gtgcgctaccgggacgacaagcccgccgcgcaggccgacacggtgcacaccgtgcgtgaa
ctgttcgaacgcagcggttga

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