Mycolicibacterium neoaurum NRRL B-3805: MyAD_22245
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Entry
MyAD_22245 CDS
T05013
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
myn
Mycolicibacterium neoaurum NRRL B-3805
Pathway
myn03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
myn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MyAD_22245
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
myn03400
]
MyAD_22245
Enzymes [BR:
myn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MyAD_22245
DNA repair and recombination proteins [BR:
myn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MyAD_22245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Big_4
Motif
Other DBs
NCBI-ProteinID:
AMO08595
LinkDB
All DBs
Position
complement(4770005..4772299)
Genome browser
AA seq
764 aa
AA seq
DB search
MVERVGRVKLTNPDKVLYPQTGTTKAEVFDYYVAVAAAMLPHIAGRPVTRKRWPNGVGQS
DFFEKQLASSAPDWLRRGSVTHRSGTTTYPIIDTAEGLAWIAQQASLEVHVPQWRFDPHG
APGPATRIVFDLDPGEGVTFRQLCEVAHEVRGYVEDIGLTAYPLTSGSKGVHLYVPLADP
ISSHGASVLAKRIALALEKSMPTQVTATMTRSLRDGKVFVDWSQNSAAKTTIAPYSMRGR
AAPTVAAPRSWEELADPDLRQLNFEEVLHRLERDGDLLADLDDPLPVEDRLSTYRTMRDA
GKTPEPVPTAPPAVGHDNTFVIQEHHARRLHYDFRLERDGVLVSWAIPKNLPETTSVNHL
AVHTEDHPLEYAGFEGDIPAGEYGGGKVIIWDAGTYEAEKFRDPGVDGEKPIDTDGKGQA
KGEVIVTLHGAKVRGRYALIQTGGKNWLAHRMKEQPGTTVADLKPMLATHGSVAKLKPAG
WAFEGKWDGYRMLVEIDHGELMLRSRSGRDITAEFPQLRSLAADLADHRLILDGEVVALD
ADGVPSFGAMQNRSSGSNIEFWAFDLLAMDGRSLLRAKYRDRRKLLELLGRDGALIVPDL
LDGDGAAALEYVREHGYEGVIAKKWDSTYQPGRRSQSWIKDKLWRTQEVVIGGWRAGEGG
RTSGIGALVVGVPGRDGLQFVGRVGTGFTEKMLTDLRTTLAPLETSDSPFTARLSGPDAR
GVTYVRPELVGEVRYSERTSDNRLRQPSWRGLRPDKSPDQVVWE
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
gtggtggagcgtgtgggccgggtcaaactgacgaatccggacaaggtgctgtatccgcag
accggcaccaccaaggccgaggtgttcgactactacgtcgcggtcgccgcggcgatgctg
ccgcacatcgccggccgcccggtcacgcgcaagcgatggcccaatggcgtcggccaatcg
gacttcttcgaaaagcaactcgcgtcgtcggcgccggactggctgcgccggggatcggtg
acgcaccgctccggtaccacgacctaccccatcatcgacaccgccgaaggattggcctgg
atcgcccagcaggcatcgctggaggtgcacgttccgcagtggcggttcgacccgcacggc
gcgcccgggccggccacccgcatcgtgttcgacctcgatccgggagagggtgtgaccttc
cggcagctctgtgaggtcgcccatgaggtgcgcggctacgtcgaggacatcggcctgacc
gcctacccgctgaccagcggcagcaagggcgtgcacctgtacgtgccgctggccgatccg
atcagctcccacggggcttcggtgctggccaagcgaatcgcgctggcgctggagaagagc
atgccgacccaggtcaccgccaccatgacgcgcagcctgcgggacggaaaggtgttcgtg
gactggagccagaacagcgcggccaagaccaccatcgcgccctactcgatgcgtggccgc
gccgcgcccaccgtggccgcgccgcgcagctgggaggaactcgccgatcccgacctacgg
cagctgaacttcgaagaggtgctgcaccgactggaacgcgacggcgatctgctggcagat
ctggatgatccgctgcccgtcgaggaccgactgagcacgtatcgcaccatgcgcgatgcc
ggtaagacccccgaaccggtcccgacggcaccgcccgcggtggggcacgacaacaccttc
gtcatccaagagcatcacgcgcgccggctgcactacgacttccggctggaacgcgacggg
gtgctggtgtcctgggcgatcccgaagaacctgcccgagacgacatcggtgaaccacctg
gccgtccataccgaggaccatccgctggaatacgccggcttcgaaggggacatcccggca
ggggagtacggcggcgggaaggtgatcatctgggacgccgggacttacgaggccgagaag
ttccgcgatcccggtgtcgacggtgagaagccgatcgacacggacggaaaggggcaagca
aagggggaggtgatcgtgacgctgcacggcgccaaggtgcgtggacgttacgcgctgatc
cagaccggcggaaagaactggctggcgcaccgcatgaaggagcagcccggcacgacggtg
gccgacctgaaaccgatgctcgcgacccacgggtcggtggcgaagctgaaaccggcaggc
tgggcgttcgagggcaagtgggacggataccgcatgctggtcgagatcgatcacggtgag
ttgatgctgcgctcgcgcagcggtcgcgacatcaccgcggagttcccgcagttgcgttcg
ctggcagccgatctcgccgatcatcggctgatcctcgacggtgaggtcgtggcattggat
gccgacggtgtgccgagcttcggtgccatgcagaatcggtcgtcgggcagcaatatcgag
ttctgggcgttcgatctgcttgccatggatggccgttcgttgttgcgggcgaagtatcgc
gaccgccgaaagctgctggaactgctgggccgggatggcgcgctcattgtgccggatctg
ctcgacggtgacggcgccgccgcgctggagtacgtgcgcgagcacggttatgagggcgtg
atcgccaagaaatgggactcgacctatcaaccggggcgacggtcgcagtcctggatcaag
gacaagctgtggcgcacccaggaagtggtcatcggcggctggcgggccggcgagggcggt
cgcaccagcgggatcggcgcactggtcgtgggtgtcccgggccgggacggactgcagttc
gtcggccgtgtcggtaccggtttcaccgagaagatgctcacggacctgcggaccacattg
gcgccgttggagacgtcggattcacccttcaccgcacgcctttccgggccggatgccagg
ggggtcacctacgtgcgtcccgaactggtgggtgaggtccgctatagcgagcgcacgtcg
gacaatcggctgcgtcagcccagctggcgaggattacggccggacaagtcgccggatcag
gtggtctgggagtag
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