Maylandia zebra (zebra mbuna): 101469780
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Entry
101469780 CDS
T02814
Symbol
col22a1
Name
(RefSeq) collagen alpha-1(XXII) chain isoform X1
KO
K16630
collagen type XXII alpha
Organism
mze
Maylandia zebra (zebra mbuna)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
101469780
NCBI-ProteinID:
XP_004564426
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Position
LG22:26863628..26933832
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AA seq
1619 aa
AA seq
DB search
MELRLGFRITLVLVILALTLSSEKVEAQRAGCKNVHYDLAFILDTSSSVGKENFEKIRQW
VSNLVESFDVAPDKTRVAVVRYSDRPTTEFNLGQHKTLEDVKRAASNIRYLGGNTMTGDA
INYTTSNIFTVQNGARPVARGIQKVAILLTDGRSQDYVLEPSKKAAKADIRMFAVGIGEA
LKEELEEIAAEPKNAHVFHVTDFNAIDKIRDRLRRRLCENVLCPNMKVQPDRFKPGSTSY
GLEEVPGFDLMEYFNVRDILGARDEDGQSSYVRLGTMPIVQNTEDVFRQGLPDEYAFVTT
FKFRKTSRREDWYLWQIFDKYGIPQVSIRLDGENKAVEYNAVGLTKDAVRAVFKNPEVDN
LFDRNWHKIALSVESKSVSLYLDCKHIQTLPIEDREDIDIQGKTVIGKRLYDSVPIDFDL
QRMMIYCDSKHAELETCCDLPNGPCPKTVVTEAPPYKIPTPTPTSAEQQRGPQVNCSCPA
GEKGRMGAPGVAGPKGEKGDTGPKGAIGPPGLKGEKGQSGSINSVKGGRGEKGDRGSIGL
TGPPGQKGEKGVGGIPGIDGLTGDKGDTGEAGLAGDPGLPGPAGPRGLQGDAGIPGAPGP
KGVTGDSGTKGETGTPGTRGEPGLDGLTGKPGFPGKDGLRGLTGVPGPNGVKGDKGERGL
PGLPGDAVQTEGLRGEKGEPGPQGPPGAEGHPGPPGPPGEQGLPGNPGEFGQRGRKGEGG
LPGVDGLPGPAGPQGPPGPPGNQGNTGPPGLPGEIGFPGKQGEAGKPGIPGKDGLDGVPG
SDGAMGLRGERGADGFPGKPGPKGDEGPPGPRGPPGERGEAGAPGQLGTAGARGDRGVPG
ERGQTGPVGPKGEKGDKGEVGAMGPPGIPGNVANVIPEPGEPGRPGEKGEKGEQGKPGEM
GPRGLPGEQGFKGPPGLPGPKGETGLTGETGRVGDPGPPGVAGLQGPRGLPGSVGIPGII
GPPGPAGQRGDKGEPGKPGQQGLAGPHGEPGLPGPPGLPGKGKDGQNGDPGPQGIQGPPG
LKGQPGSRGEPGLPGDRGPAGEGKVGQMGPPGQTGPSGPVGLRGPPGVAGPQGPAGHNGL
PGRPGEKGSPGEPGKAPDFDPKEFCSDCPAGPPGPPGLPGIPGDKGQQGPAGKNGEDGYQ
GPPGLAGPPGAPGADGGKGVKGDRGPAGNPGDKGDKGHPGPPGHPGPPGLMGTPGNDGLP
GPAGPPGPPGEKGKEGLKGIQGPPGLPGLIGQPGKMGKDGRPGEPGEPGKQGETGPPGNS
GLRGLPGFKGHRGEPGAPGTKGEDGKPGSPGRDGKAGKEGLRGPPGPEGLLGPRGEPGKP
GEPGPSGKSGLPGTPGLRGDKGEPGNPGLPGFSGPKGPSGPPGPIGPEGKQGVPGRAGDR
GIKGEKGDPGTKGDKGQSGEPGMPGNPGPPGRKGHTGMMGMSGPQGEIGAPGPQGPSGNP
GLPGPRGESVSLEQMRRLIQEELAKQLDAKLAYLMAQMQPAHVKSTAGRPGPPGPPGKDG
SSGRPGPPGEPGMPGQNGGEGPRGPMGPKGEKGATGEKGDPGIGERGEPGPAGPIGPAGM
PGYGKDGSPGQAGAQGEPGNPGPHGQPGPPGPAGQCDPTQCAYYASLAQRPHNKNVKGT
NT seq
4860 nt
NT seq
+upstream
nt +downstream
nt
atggaattaagactgggatttaggatcaccctggtcttggtcatcctggccttgactctt
tccagtgagaaggtggaagcacaaagagcaggttgtaaaaacgtccactatgacttggct
tttatcctggatacctcatccagtgttggaaaggagaactttgagaagattaggcaatgg
gtgtctaacctggtggagtcttttgatgtagcacctgacaagacaagggtagccgtggtt
cgctacagtgacagaccaaccactgagttcaacctagggcaacacaagaccctggaagat
gtgaagcgagctgcaagcaacatacgctacctggggggaaatacaatgactggggatgct
atcaactacacaaccagcaacatcttcacagtgcagaatggagcgaggccggtcgccaga
ggcattcagaaggtagccattcttctcacagatggccgaagccaggattatgttttggag
ccgtccaagaaagctgccaaagcggacatcaggatgtttgctgtgggcataggggaggct
ctgaaggaggagctggaagagattgcagcggagccaaagaatgcccatgttttccacgtt
acagacttcaatgccattgacaagatcagggacaggctgaggaggaggctgtgtgagaat
gtgctgtgtccaaatatgaaggttcaacctgatcggtttaagcccggcagcaccagttat
ggtcttgaagaggttccaggatttgacctgatggagtatttcaacgtgagagatattctg
ggagccagagatgaagatggacaaagttcatatgttcgccttggcaccatgcctatagta
caaaacacagaagatgtgtttcgtcaagggctgccagacgaatatgcctttgtgaccacg
tttaaattcaggaaaacctcgaggcgtgaagactggtacctctggcagatttttgacaaa
tatggaattccacaggtgtccatccgtctggacggtgagaacaaggcagtggagtacaac
gctgtgggccttacaaaagatgctgtgagggctgtgttcaaaaaccctgaagtcgacaac
ctgtttgaccgcaactggcacaagattgccctcagtgtggagtccaagtctgtgtctctg
tacttggattgcaagcacatccagacgctgccgatagaagacagagaggacattgatatc
caggggaagacagtgattgggaaaaggctgtatgacagtgtgccaattgattttgacctc
cagagaatgatgatttactgcgattccaagcatgccgagctggaaacctgctgtgatcta
cctaatgggccttgccctaagacggttgtgacagaggctcccccttacaagatccctacg
ccaacacctaccagtgctgagcaacaacgaggccctcaagtgaactgctcctgccctgct
ggagaaaagggtcgcatgggtgcacccggtgttgcaggtcctaagggtgaaaagggtgac
actggccctaagggtgctatcggaccacctggactcaaaggagaaaaaggacaaagtggc
agtataaactctgtcaaaggtggcagaggtgagaagggtgatagaggcagcatagggttg
acaggtcctcctggacaaaaaggagagaagggagttggtggaatcccaggcattgatggt
ttaactggagacaaaggcgacacaggtgaagcaggactggctggtgatccagggctacca
ggtccagctggaccgaggggtcttcaaggggatgctggaattcctggtgcaccagggcca
aaaggtgtcactggtgactcgggtacaaaaggtgaaacgggaacaccgggaaccaggggt
gagccaggtcttgatggattaactggaaagcctggctttcctgggaaggatggtttgaga
ggtctgactggagtacctgggcccaacggggttaaaggtgacaagggggagagaggtctt
cccggattacctggggatgcggtacaaacagaaggtttacggggtgagaagggtgagcct
ggaccacaagggcctccaggtgctgaaggacatccagggcctcctggtcctcctggtgaa
caaggtttacccggtaaccctggagaatttggccagaggggaaggaaaggtgaaggtgga
ctcccaggggtggatggccttcctggacctgctggtcctcagggtccacctggaccacca
ggaaaccaaggaaacactggacctcctggtctgccaggtgaaattggatttccaggcaaa
cagggagaggctggaaaacctggtattcctggtaaagatggcctggatggtgttcctgga
agtgacggtgccatggggctcaggggcgagcgtggagcagatggttttcctggcaagcct
ggacccaagggcgacgaagggcctcctggaccaagaggacctccaggggagagaggggaa
gctggtgctcctggacagctaggtactgctggagcacgaggtgaccgaggcgtgccggga
gagagaggacagacaggaccagttgggccaaaaggtgaaaaaggcgacaagggtgaagtg
ggagctatgggaccgccgggcattccgggaaatgttgcaaacgtcattcctgagcctggt
gaacctgggagacctggagagaaaggagagaaaggggaacaagggaaaccaggagagatg
ggtccaagaggactacctggtgaacaaggttttaagggaccacctggactaccgggccca
aagggtgagactggactcactggagagactgggcgtgttggagacccaggtccacctggc
gtagctggccttcagggtccccgtggactaccaggaagtgtgggcataccgggaattatt
gggcctccaggtccagctggacaaagaggagacaagggggaacctggaaaaccaggacaa
caaggtctcgcaggaccacatggagagcctggtttgcctggacctcctggactaccaggg
aaggggaaagatggacaaaatggagacccggggccacagggaatccaaggacccccaggg
ctgaagggtcaaccagggtcaagaggagaacctgggttaccaggggacaggggtcctgca
ggagaaggcaaagtaggacaaatgggacctccaggacaaactggaccatctggacctgtg
ggtttgaggggtccaccaggtgttgctggtcctcaaggcccagcaggtcacaatggtctg
ccaggaaggccaggagaaaagggctcaccaggagagcctggaaaagccccagactttgac
ccaaaggagttttgctcagactgccctgcaggaccaccgggaccacctggactcccagga
atcccaggagataaaggacaacagggacctgctgggaaaaatggagaagatggataccaa
ggcccgccaggactagccggacctccaggggcccccggagccgatggaggaaagggtgta
aaaggtgatcgaggacctgctggaaaccccggagacaaaggggacaagggtcacccgggg
cctcctggtcatccaggtcctcctggattaatgggtacacctggtaacgatgggttgcct
gggcctgcgggccccccaggaccccctggagaaaagggcaaagagggtctcaaaggaatc
cagggaccaccagggcttcctggcttgatagggcagcctggcaaaatgggaaaagatggc
agaccaggtgaaccaggagaacctggcaaacaaggtgaaactggacccccaggaaactca
gggctcaggggactccctggcttcaaaggccacagaggagaacctggagctccaggaact
aagggagaagatggaaagccgggatcacctggacgtgacggtaaagctgggaaagagggt
cttcggggacctccagggccagaaggacttttaggcccaagaggagagccgggcaagccg
ggtgaaccgggaccgtcaggaaaatcaggtctccccggaacaccgggtctcaggggagac
aagggcgagccgggcaatccagggttaccaggcttcagtggacctaaaggcccctcgggt
ccgcccggtccaattggcccagaaggaaaacagggtgtgccgggcagagctggtgatcgc
ggtatcaaaggagagaagggagatccaggtacaaagggagataaagggcagtcaggagag
ccaggtatgccgggaaaccctggtccccctggcaggaagggccacacggggatgatgggc
atgtcaggaccacaaggagaaatcggagccccagggccacaaggaccttcaggaaaccct
ggccttccagggcccaggggagagtcagtgtcactggaacagatgaggcggctcatccag
gaggagctggcaaaacagctggatgccaaattagcttatctcatggctcagatgcagcca
gcacatgtgaaaagcacagcgggccgccccggacctccgggccctccgggtaaagatggc
agctctggacgccctgggccccctggagaacctgggatgcccggacagaatggaggagaa
ggacccaggggacccatggggcctaagggtgagaaaggagcaacgggagagaagggagac
cccgggattggtgaaagaggagagccaggtcctgctggacccataggcccagcaggtatg
cctggttacggcaaagacggaagcccgggacaagccggagcccaaggagagccaggaaac
cccggcccccacggtcagcctggacctccgggccctgctggccagtgcgacccaacccag
tgtgcctactatgccagcctggcacaacggccccacaacaaaaatgtgaaggggacttaa
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integrated database retrieval system
