Maylandia zebra (zebra mbuna): 101469789
Help
Entry
101469789 CDS
T02814
Symbol
rc3h1
Name
(RefSeq) roquin-1 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
mze
Maylandia zebra (zebra mbuna)
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mze03000
]
101469789 (rc3h1)
04121 Ubiquitin system [BR:
mze04121
]
101469789 (rc3h1)
Transcription factors [BR:
mze03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
101469789 (rc3h1)
Ubiquitin system [BR:
mze04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
101469789 (rc3h1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-C3HC4
zf-CCCH
zf-C3HC4_2
Prok-RING_4
zf-CCCH_4
zf_CCCH_4
FYVE
Baculo_IE-1
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
101469789
NCBI-ProteinID:
XP_012772192
LinkDB
All DBs
Position
LG18:15273290..15288869
Genome browser
AA seq
1125 aa
AA seq
DB search
MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD
IEQLPVNTALLQLVGGQVPKAQPVALITSPEDSQHYEEARQCVEELALYLKPLSNTRGVG
LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR
DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGSGGLLSDDPLDVAVTRKPSPL
ANGTGGSSLPTLIARGTDPVSYELPRKSVKMDGGSPSAPGSPPDVLDTVPKHGMTLPPHA
LAHPRISADNLSVVPRGSPVYPQQQLAEMYGDTRPPPSASQYEPQPYSAGYPYQQPPQYV
PRDYIRNPPPHSESGPPYPDPYPGYGPPERTYPAPHSGQQFSYPHPSHYDRGRHMSYSGP
PPPPQPYPAQREGLVRMSPAPLDVPPPSTGHSNSVYHPEPSSRDRYAADGYYPPGAQPMN
MRTYVRGPSCGGPQASLDYLHRRRQELLSQLEERKVISPPPFAASPTLTHPFPNDYPPDY
DEDNSKAIPKCRLANYTGQYSPWSCETIGSYIGTKDPKPKDVMVPPPVEMMNVDAKGLRE
PSLEAPRKGTEVKDDDPIIPFGTLPTVSRFGAISRTSKTGYQTTGPVQAMASTPQNPNSK
HMAMPAEYTYGSHGGWGGTSYPTHQNASSSQGHFSERLPMAASDREQLKIELQQVNQQIS
QQTQMHSMEAASNSLLLQREASALATHPGQGQAAVASQQQQPKWPSGGASATAVSSEQLS
LELHQVEKEIGKRTREMAMENQVVHDVQQYKMKPAENGQPEHKTPLEEISLALAEVSNGS
SGLPESAVGGSMLSLTNKASALSLCSDPGVTGSEMQKNGVVHSCS
NT seq
3378 nt
NT seq
+upstream
nt +downstream
nt
atgccagtgcaagcaccacaatggacagagttcctgctgtgcccgatctgcacacagaca
tttgaggaaactgttcgcaggcccatcagcttaggctgtggacatacagtctgcaagatg
tgcctgaacaagttgcaccgaaaggcctgtccctttgaccagacagccatcagcacagac
atcgagcagttacctgtcaacacagctttgttgcagctggtgggaggccaggttcccaag
gctcagccagttgctttgataacaagtccagaggactcacaacattatgaggaggccagg
cagtgtgtggaggagctggccctctaccttaaacccctcagcaacacccgaggtgtaggg
ctgagcagcaccgctcagagcatgctgagtcgacccatgcagaggaaactggttactctg
gtccactgccagctggtggaagaagaaggccgtgttagagccatgagagcggctcgctct
ctgggcgagcgaactgtcactgagctcatcttgcagcaccagaatccacagcagctctcg
tccaacttgtgggctgctgtccgtgcacgaggatgccagtttctcggcccagccatgcag
gaagaagccctaaagttggtcctccttgctcttgaggatggctctgctttgtcaagaaag
gtgctggttctatttgtagtccagaggcttgagccacggttccctcaggcttccaaaact
agcataggccacgttgtgcagcttctctacagggcctcctgtttcaaggttaccaaacgt
gatgaagattcatccctaatgcagctgaaagaggagtttcgtacttacgaggctctgcga
cgggagcacgactctcaaattgttcagattgctatggagggtggattgcggattgctcct
gaccagtggtcttctcttttgtatggggatcagtctcacaagtcacacatgcagtctatt
atagataagctgcagaccccagcatcttttgctcagagtgtccaggagctgacaattgcg
ctgcaaaggactggagacccagccaacctcaacaggctgcggccccatctggaacttttg
gccaacattgatcccagtcctgatgctcctcctcctacatgggagcaacttgagaagggg
ttggtagcagtgaaaacagtggtacatggcctggtggactttatccagaaccacagcaag
aaaggagccgatcctcaacagcctcctcagcacagcaaatacaagacttacatgtgccgt
gacatgaagcagaagggaggctgtcctcgtggagccagctgcacctttgcacactctcag
gaagaactagagaagtatcgtaagatgaacaagcgtctggcagctcgcctccctggctca
ggaggactcttgtcagatgatcctctcgatgtagcagtgacccgaaagccttcacccttg
gccaatgggactggtggatcctctttgcccacgcttattgctcgtggcactgacccagtc
tcatatgaactgccgcgtaaatctgttaagatggacggagggagtcccagtgccccagga
tcacctcctgatgtcctggacactgtgcccaaacatggcatgactctgccacctcatgcc
ctagcccaccccaggatttcagcagataacctgtcagtggttcccagaggatcaccagtg
tacccccagcaacagctcgctgagatgtacggtgacactcgtccaccaccttctgcctct
cagtatgagccccaaccatattctgcaggttacccctaccagcagccaccacagtatgtt
ccaagagattacatccgtaaccctcctccgcatagtgagtcaggacccccttacccggat
ccttaccctggttatggccctccagaacgaacctacccggcccctcactctggtcaacaa
ttctcctaccctcatccttcacactatgacagaggtcgccatatgtcctacagtggtccg
ccacctccccctcagccttacccagctcaaagggaaggcttggtcagaatgagtccagca
cctctagatgtgcccccaccatcaacagggcattccaactctgtttaccacccagagccc
agtagccgggatagatatgcagcagatggctactatccaccaggtgctcaacctatgaat
atgaggacctatgtgagggggccatcatgtggtggtcctcaagccagcctggactatctg
catcgacgccggcaggagctgttatcccagctggaggaaaggaaggtcatttcgcctcca
ccttttgctgcttcacccactcttacacatcccttccccaacgactaccctcctgattat
gacgaggataactccaaagcaattccaaaatgcagactagccaactatacggggcaatac
tctccctggtcttgtgaaactattggctcatacattggcacaaaagatcccaaacccaaa
gatgttatggttcctcctcctgtggagatgatgaatgtggatgctaaaggcctgagagaa
ccgtcgttggaggcccctcggaagggcacagaagtaaaggatgatgaccccattattcca
tttggtaccctgcccactgtgtcgcgctttggggccatctctcgcacctcaaagacaggc
tatcagaccactggacctgtacaggccatggcctccactccccagaacccaaattctaaa
cacatggccatgccagcagaatacacatatggaagccatggaggatggggtggaacttca
taccccacccaccagaatgcctcctcctctcagggacattttagtgagcgtctacccatg
gcagcctcagacagagagcagttaaagattgagctacagcaggtgaaccagcagatcagc
caacagacacagatgcacagcatggaggctgccagtaattctttactcctgcagagggag
gccagtgcattggctactcaccctggccagggccaggcagcagtagcctcacaacagcaa
caacccaagtggccatcagggggagcaagtgcaacagctgtctccagtgaacagcttagc
ctggagcttcaccaggttgagaaagagatcggcaaaaggacccgtgagatggctatggaa
aaccaggtggtccatgatgttcagcagtacaagatgaaacctgctgagaatggacagcca
gagcataagactccactggaagaaatctccttggcgcttgctgaggtgtcaaatggctcc
agcggtctgccggaaagtgcagtgggcgggtccatgctgtcactgacgaataaagcatct
gcattgagcttatgttcagatccaggtgtcactggttcagagatgcagaagaatggtgtt
gtccattcctgctcttag
DBGET
integrated database retrieval system
