Maylandia zebra (zebra mbuna): 101483213
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Entry
101483213 CDS
T02814
Name
(RefSeq) collagen alpha-1(IX) chain isoform X1
KO
K08131
collagen type IX alpha
Organism
mze
Maylandia zebra (zebra mbuna)
Pathway
mze04510
Focal adhesion
mze04512
ECM-receptor interaction
mze04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
mze00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101483213
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101483213
09142 Cell motility
04820 Cytoskeleton in muscle cells
101483213
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
mze00535
]
101483213
Proteoglycans [BR:
mze00535
]
Extracellular matrix (ECM) proteoglycans
Others
101483213
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
101483213
NCBI-ProteinID:
XP_012775830
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Position
LG13:complement(19372405..19391031)
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AA seq
925 aa
AA seq
DB search
MGGIERNILLYSLCCCYVIPLCLCTGLHSQTVRFSSQVGIHLEQQSMCPQISIGEDHFPG
FYIMSQFHIAELARRGTVKKVAGPSSQNVAYQIGPAFNFRINTRSAYPLGLPEEFAFLTV
LRMSGSTVNQNWNIWQMQDVNGDEQMAVRLNGESKSLEFTFTALNGGRQTVVFSPLGFLF
NDQWHRVFLEISRDSVALFVDCVLIDSQDIPPRLEVSLNGFTLIGKLKDNPVVAVPVELQ
SMLIHCDVTRARKEECYDLPGGASTDVAEVLNNQGPPGPPGPAGVPGIDGIAGERGDDGE
DGPPGPDGDAGKPGSGGLPGIPGNDGLTGPIGDPGPDGPPGQKGEPGKPGPRGAAGVGPD
GPLGPPGPGGLPGELGKAGPPGAMGVRGPQGPRGPAGPRGASGVLGSTDLCPNSCPPGTL
GHPGLPGMKGHKGAKGEAGEPGKQGHKGAEGEQGSPGEVGAQGPRGPQGIRGAMGMMGPK
GERGPRGPDGDPGPQGVAGAAGDVGQRGVMGEPGPKGEQGAQGPRGLTGVPGPKGESGLP
GVDGREGIPGMPGAKGSVGKSGIPGEVGLQGLPGLPGVPGPKGISGPKGDSGNPGLSGAI
GSAGKLGERGEQGELGSVGPIGEPGDRGQQGPAGPAGKPGPRGPKGDPGLPGLPGPPGLP
GIKGERGDRGEPGPKGEQGVQGDEGNPGEKGDVGDSGEPGPKGEVGNPGEAGRIGPEGSR
GQPGIEGPPGTPGPRGMQGNRGPPGVRGTQGPAGKQPSDQHIKQVCMRVMQEQLTQLAAS
LRRPESGIAGLPGKPGPPGPPGPPGDNGFPGHAGSRGLPGLKGPPGQMGAKGPKGDMGDR
GARGPIVRGPKGQPGPPGLPGEPGRPGYGRDGQDGQRGPPGIPGQLGVPGPPGPAGPNGY
CDPSACNLQAGAAQQSLDVKGPAGN
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgggtggaatcgaaagaaatatcctgctctattcattgtgctgctgctatgtgatccca
ctgtgcctctgcactggacttcattcccagactgtgagattttcatctcaagttggtatt
catttggagcagcagtccatgtgccctcagatcagcattggggaggatcatttcccagga
ttttatatcatgtcacagttccacattgctgagttggcaagaaggggcactgtgaaaaag
gtggctggaccatcttctcagaatgttgcttatcaaataggcccagcattcaacttcaga
atcaacacaagatcagcctatccgcttggattgccggaggagtttgcatttttgacagtg
ctgcgcatgagtggcagcaccgtaaatcaaaactggaatatctggcaaatgcaagatgtg
aacggcgacgagcagatggccgtcaggctcaacggggaatccaagtcgttggagtttact
ttcacagcgctaaacggagggaggcagactgtcgttttcagcccactggggtttcttttc
aatgaccagtggcacagagtgttcctggaaatcagcagggactctgtggcccttttcgtg
gactgtgtcctgatcgattctcaggatattccacccagactagaagtcagccttaatggc
ttcacgttaataggaaagctcaaggataacccggtggtagcagttccggttgaactgcag
tcaatgctaattcactgcgatgtgactcgagcccggaaggaggaatgttatgacctccca
ggcggggcatcgacagatgtggcagaagtgctgaataaccaaggaccccctggcccccct
ggacctgcaggtgtcccaggaattgacggcattgctggagagaggggagacgatggcgaa
gacggtcctcctggacccgacggagatgcaggtaaacctggctctggaggattacctgga
attcctggaaatgatggtttgacaggccccattggagatcctgggcctgacggtcccccc
ggacagaaaggggaacctgggaaacctggacctcgtggagcagctggtgttgggccagat
ggaccccttgggcctccgggacctggaggacttccgggtgaattaggaaaagctggacca
cctggggctatgggtgtgagagggccacagggacctcgtggaccagcagggcccagaggt
gcttctggagtgcttggcagcactgatctgtgtcccaactcctgtccacctgggaccttg
ggacatcctggtcttcctggcatgaagggccacaaaggtgcaaagggtgaagcaggagaa
cctgggaaacaaggacacaagggcgcggagggagagcagggaagtccaggggaggttgga
gcccaaggaccgaggggacctcagggaattcgtggagctatgggaatgatgggcccaaag
ggagagaggggacctcgaggtcctgatggagatccaggtccacagggtgttgcaggggca
gctggggatgtaggccaaagaggtgttatgggtgaacccgggcctaaaggcgaacaaggt
gctcaaggaccaagaggactcacaggtgttccaggtcccaagggcgagtctggcttacca
ggtgtggatggtcgtgagggtattcctggaatgcctggagcaaagggaagcgttgggaag
tcaggcatccctggagaggttggacttcaagggcttccgggtttgcctggtgtacctgga
ccaaaaggcataagtggccctaagggagattctggtaacccaggcctttctggagcaata
ggatctgctggcaaactcggtgagcgtggagaacagggagagctgggatctgtcgggccc
attggtgagcctggagatagaggacagcaaggtcctgcaggtcccgctggaaagccaggt
ccccggggacccaaaggtgaccctggtcttcctggtctcccaggtcctcctggtctgcct
ggaataaaaggagaaaggggagatcgtggagaaccaggacccaaaggagagcaaggagtt
caaggtgatgagggaaatccaggagaaaagggggatgttggtgactcgggagaacccggc
cctaaaggggaagttgggaaccccggtgaggctggcagaataggtcccgagggaagtcga
ggacagcctggcattgaaggaccacctggcacacctggaccacggggcatgcagggaaac
agaggcccacctggagtcagaggaacacagggtcctgcgggtaaacagccaagtgatcag
cacatcaaacaagtttgcatgcgagtcatgcaagaacagctgactcagttagctgctagt
ttaaggaggccagagtctggcattgctggtttacctggaaaacctggcccaccggggcct
cctggtcctccaggagacaacggcttccccgggcatgctggctcaagaggccttccagga
ctcaaagggccaccaggacagatgggagcaaaaggacccaaaggtgacatgggagacaga
ggggccagaggacccattgttcgaggaccgaaaggtcaacctggaccacctggacttcct
ggggaaccgggaaggcctggctatggccgtgacggtcaggatgggcagaggggacctcct
ggcattcctggacagctcggtgtgcccgggcctccgggtccagccggtcctaatggttac
tgtgacccatcagcctgcaaccttcaggcaggagctgcgcagcagtccttggatgtgaag
ggacctgcaggaaactaa
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