Naasia aerilata: GCM126_35640
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Entry
GCM126_35640 CDS
T09129
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
naei
Naasia aerilata
Pathway
naei03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
naei00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GCM126_35640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
naei03400
]
GCM126_35640
Enzymes [BR:
naei01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GCM126_35640
DNA repair and recombination proteins [BR:
naei03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GCM126_35640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
LigD_N
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
BDZ47655
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Position
3298386..3300905
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AA seq
839 aa
AA seq
DB search
MARSSGDAVVVDGRRLRLTHLDKVLYPETGTTKAEVIDYYARVAAVLLPHTRERPLTRKR
WVNGVGTESAPGEVFFQKNVDDGAPDWIPRRVQHHKSHTIEYPLLNDRATLAWAAQVSSL
ELHVPQWRFDAQGTPQNPDRLVLDLDPGPGTGLQECAEIARRVRPILEGVGLRPFPVTSG
SKGIHLYAHLDGSQTSDEISAFAHELARALEADDPDLIVSDMKKTLRVGKVLVDWSQNSA
AKTTIAPYSLRGRAHPTVAAPRTWEELDDPGLAHLLFSEVLERVARDGDLLAALDPPRVL
EPTPERMATFETTPESADRLAKYRSMRDASKTPEPVPAEPALPSDGQSFVIQEHHARRLH
YDFRLERDGVLVSWAVPKGVPESVSENHLAVHTEDHPLEYGTFEGRIPAGEYGGGEVTIW
DAGTYELEKWRDSEVIVTLHGRPGGPLGGPVRVALIRTGRAPGDEKNWLMHRMKPEHGSP
AAAEPVVAAPGTQDPPSPVAESARGAAEADRSAIRDLLERGPMLATLGTEDTVGSGHDWA
FEMKWDGIRALVEVRDGRVRVVSRNRNDLTAGYPELAGVPAPVSAGTALLDGEIVAIGRG
GRPDFGLLQQRMNLQREADIQAARRSVPVHLMVFDLLEVDGRALLDRPYSERRELLARTV
ASTGVVQVPPEFSGAESTVQEALAASKELGLEGLVAKKRDSLYSAGRRSPSWVKIKHHLM
QEVVIGGWRPGQGGRSGAIGSLLLGIPGDGGLTYVGKVGTGFTSRSLAEIGARLAPLEQT
DNPFLDIPRPDAKDAHWVSPELVGEVEFAEWTGPGRLRQPSWRGWRTDKAPGDVVREDA
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgctcgagcggggacgcggtggtcgtggacggtcgacgcctccgcctgacccac
ctcgacaaggtgctctaccccgagacgggaaccaccaaggccgaggtgatcgactactac
gcgcgggtcgccgccgtgctcctgccccacacccgggagcgtccgctgacccggaagcgc
tgggtcaacggcgtcggcacggagtcggcgccgggcgaggtgttcttccagaagaacgtc
gacgacggcgctcccgactggatcccgcgacgcgtccagcaccacaagtcgcacacgatc
gagtacccgctgctcaacgaccgcgcgactctggcctgggccgctcaggtgtcctccctc
gagctccacgtgccgcagtggcgcttcgacgcccagggcacgccccagaacccggaccgc
ctcgtcctcgacctggaccccggcccgggcacggggctgcaggagtgcgcggagatcgcg
cgccgggtgcgcccgatcctcgagggcgtcgggctccgcccgtttcccgtgacgagcgga
agcaagggcatccacctctatgcccatctcgacggcagtcagacgagcgacgagatctcg
gccttcgcccacgagctcgcgcgcgccctggaggccgatgatccggacctcatcgtcagc
gacatgaagaagacgctgcgggtgggcaaggtgctcgtcgactggagccagaacagcgcg
gcgaagacgacgatcgcgccgtactcgctgcgcgggcgcgcgcaccccacggtcgccgcg
ccgcgcacgtgggaggagctggacgatccgggccttgcccacctcctcttctcagaggtg
ctcgagcgagtggcccgggacggcgacctgctggcggctctcgatccgccccgggtcctc
gagccgacgccggagcgcatggccacgttcgagaccactcccgagagcgccgaccggctc
gcgaagtaccggagcatgcgggatgcgtcgaagacgccggagccggtccccgccgagccg
gcgctgccctccgacgggcagagcttcgtcatccaggagcaccacgcgcgccgcctgcac
tacgacttccggctggagcgcgacggcgtcctcgtgtcctgggcggtccccaagggcgtc
ccggagagcgtcagcgagaaccacctcgccgtgcacaccgaggaccacccgctcgagtac
ggcaccttcgagggccgcatcccggccggggagtacggcggcggcgaggtcaccatctgg
gacgccggcacctacgagctcgagaagtggcgcgactccgaggtcatcgtgacgctgcac
ggccgccccggcggacccctcggcggcccggtgcgcgtggcgctgatccgcaccgggcga
gcgcctggtgacgagaagaactggctgatgcatcgcatgaagcccgagcacggctccccc
gctgccgcggaacccgtcgtggcggccccgggcacgcaggacccgcccagccctgtcgcg
gaatcggcgcgaggtgctgcagaagccgacaggtcggcgatccgggatctcctcgagcgc
ggccccatgctcgccaccctcggcaccgaggacacggtgggcagcggtcacgactgggcg
ttcgagatgaagtgggacggcatccgcgcgctcgtcgaagtgcgggacggccgggttcgc
gtggtcagccgcaataggaacgacctgaccgccggctatcccgagctcgccggcgtgccg
gcccccgtctcggccggcacggccctgctcgacggggagatcgtcgccatcggccgaggc
ggacgaccggacttcggcctgctgcagcagcgcatgaacctgcagcgcgaggccgacatc
caggccgcgcgccggtccgtgcccgtgcacctcatggtcttcgacctgctcgaggtcgac
gggcgcgccctcctcgaccggccgtactccgagcgccgcgagctcctcgcgcgcacggtg
gcatccaccggggtcgtgcaggtcccgccggagttctcgggcgccgagagcaccgtccag
gaggcgctcgccgcaagcaaggagctggggctcgagggattggtcgccaagaagcgcgac
tcgctctactcggcgggccgccgatccccgtcgtgggtgaagatcaagcatcacctgatg
caggaggtcgtgatcggcggttggcgtcccggacagggcggacggagcggagccatcggc
tcgctcctcctcggcatccccggcgacggcggcctgacgtacgtcggcaaggtcggaacc
ggcttcacgagccgctcgctcgccgagatcggcgcccggctggcgccgctcgagcagacc
gacaaccccttcctcgacatcccgcgccccgacgcgaaggacgcgcactgggtctcaccc
gaactcgtcggcgaggtggagttcgccgagtggacggggccgggccggctgcggcagccc
tcctggcgcgggtggcgcaccgacaaggctccgggcgacgtcgtccgggaagacgcgtga
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