Nakamurella sp. PAMC28650: H7F38_08440
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Entry
H7F38_08440 CDS
T08954
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
naka
Nakamurella sp. PAMC28650
Brite
KEGG Orthology (KO) [BR:
naka00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
naka03032
]
H7F38_08440 (topA)
03400 DNA repair and recombination proteins [BR:
naka03400
]
H7F38_08440 (topA)
Enzymes [BR:
naka01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
H7F38_08440 (topA)
DNA replication proteins [BR:
naka03032
]
Prokaryotic type
DNA Topoisomerases
H7F38_08440 (topA)
DNA repair and recombination proteins [BR:
naka03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
H7F38_08440 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QNK82710
UniProt:
A0A7G8WQR7
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All DBs
Position
1858458..1861349
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AA seq
963 aa
AA seq
DB search
MATRKAATHTGVRLVVVESPAKAKTISQYLGEGYIVESSVGHIRDLPRNAADVPAKYKGE
PWARLGVNTENNFEPIYVVSPEKRAQVAKLKSLLAGADELYLATDEDREGEAIAWHLLDT
LKPKVPVKRMVFHEITPAAIRAAAEAPRELDNNLVDAQETRRILDRLYGYEVSPVLWKKV
GSNLSAGRVQSVATRIVVQRERARMAFRSGTYWGIDALLAPGDAKTKFTAALNSIDGRRL
AAGRDFDENTGALKTNSEVLLLDEDGARTVAAALEHGTATVVSVEEKPYTRKPYPPFMTS
TLQQEAGRKLGFSSERTMRTAQRLYESGYITYMRTDSTTLGQTALDAARNQARDLYGPEY
VPAAPRQYTRKVKNAQEAHEAIRPAGENFRTPGQVASGMGADEFRVYEMIWQRTIASQMV
DARGLTLSLRITAPLAGTPAFGAEALFTASGRTITFPGFLRAYVETVDAEAGGEADDAER
RLPNLTVGDELDINELTPGGHSTTPPARYTEPSLIKALEDLGIGRPSTYTSIIRTITERG
YAWRKGQALVPSWIAFAVVGLLEQHFARLVDYDFTAAMEDELDGIAEGRLGRTAWLSTFY
FGGDTGPEGSVSRAGGLKKLVGENLEAIDAREVNSLPLLKDAQGRQVTVRVGRYGPYLER
AVLPVEGETPAEDAPTVERANLPEDLAPDEVTAEVAEALFDQAEIGDAELGADPVSGHMI
VAKDGRYGPYVTEVLPEDTPTKGKNAVKPRTASLFKSMALDTITLEAALQLLTLPRVVGN
DPATGEEITAQNGRYGPYLRKGTDSRSIAAEEALFTVTLEEALALYAQPKTRGRQAAAAA
ALREVGVDPATQKPMVIKDGRFGPYVTDGETNASLRKGDEVDTITVERSAELLAERRARG
PAPKRAVVKKAAPAKAGTAKKSTTVKKPAAKAAASKAGAAKAATGTATATKTRPAVKKTG
DTG
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atggccacacgtaaggctgccacccataccggggtccgcctggtcgtcgtcgagtcgccg
gccaaggccaagaccatttcgcagtacctcggcgagggctacatcgtcgagtcgtccgtc
gggcacatccgtgatctgccgcggaatgccgcggacgtcccggccaagtacaagggcgag
ccctgggcgcggctgggcgtcaacaccgagaacaacttcgagccgatctacgtcgtatcg
ccggagaagcgtgctcaggtcgccaagctgaagtcgctgctggcgggcgccgacgagctc
tacctcgcgacagacgaggaccgcgagggcgaggccatcgcctggcacctgctggacacc
ctgaagcccaaggtcccggtcaagcggatggtcttccacgagatcaccccggccgccatc
cgggccgcggccgaggcgccgcgcgagctggacaacaacctggtcgacgcccaggaaacc
cgtcgcatcctcgaccggctctacggctacgaggtgtccccggtgctctggaagaaggtc
ggctcgaacctatcggccgggcgcgtccagtcggtggccaccaggatcgtcgtgcaacgc
gagcgggccaggatggcgttccggtccggaacgtactggggaatcgacgccctgctggcc
ccgggcgacgccaagacgaagttcaccgccgccctgaactccatcgacggccgccgcctg
gccgccgggcgcgacttcgacgagaacaccggcgcactgaagacgaactccgaggtgctg
ctactggacgaggacggcgcccgaacggtggccgccgcgctggagcacggcaccgccacg
gtcgtctcggtcgaggagaagccgtacacccgcaagccgtatccgccgttcatgacgtcc
acgctccagcaggaagccggccgcaagctcgggttctcctccgagcgcaccatgcgcacc
gcacagcgcctgtacgagtccggctatatcacctacatgcggaccgactcgaccacgctc
ggccagaccgcgctggacgccgcccgcaaccaggccagggacctctacgggcccgagtac
gtcccggcggctccccgtcagtacacgcggaaggtcaagaacgcgcaggaggctcacgag
gccatccgtcccgccggtgagaacttccgcacccccggccaggtcgccagcggaatggga
gccgacgagttccgcgtctacgagatgatctggcagcggaccatcgcctcgcagatggtg
gacgccaggggcctgaccctctcgctgcgcatcaccgcgccgctggccgggacaccggcg
ttcggtgccgaggccctgttcaccgcctccggtcgcaccatcacgttccccgggttcctg
cgtgcctacgtcgagacggtcgacgcggaggccggtggtgaggcagacgacgccgaacgc
cggctgccgaacctgaccgtcggggacgagctcgacatcaacgaactgacgcctggcggt
cattccaccaccccgcccgcccgctacaccgaaccgtcgctgatcaaggcgctggaagat
ctcggcatcgggcgcccgtcgacctacacctcgatcatccggaccatcaccgagcgcggc
tacgcgtggcgcaagggccaggccttggtgccgtcatggatcgccttcgccgtggtcgga
ctgctggagcagcatttcgcgcgtctggtcgactacgacttcaccgcggccatggaggac
gagctcgacggtatcgccgagggtcgactgggccgcaccgcctggctgtccacgttctac
ttcgggggtgacacgggaccggagggctcggtgtcccgggccggtgggctgaagaagctg
gtcggggagaacctggaggcgatcgacgcccgcgaggtcaactcgctgccgctgctcaag
gatgcccagggccgtcaggtcacggtccgggtcggtcgctacggcccgtacctggagcgg
gccgtgctgcccgtggaaggcgagacgccggccgaggatgcgccaaccgtcgagcgggcg
aacctgcccgaggacctggccccggacgaggtcaccgccgaggtcgcggaggcactgttc
gaccaggccgagatcggtgacgccgaactcggcgccgacccggtgtcgggccacatgatc
gtggccaaggacggtcggtacggtccctacgtcaccgaggtgttgccggaggacacgccc
accaagggcaagaacgcggtcaaaccgcgaacggcgtcactgttcaagtcgatggcgctg
gacacgatcaccttggaagccgccctccagttgctgaccctgccgcgggtggtcggcaac
gaccctgcaacgggtgaggagatcaccgcccagaacggccgctacggcccctacctgcgc
aagggcaccgactcgcggtcgatcgccgcagaggaggcgctgttcaccgtcacgctggag
gaggcgctggcgctgtacgcgcaacccaagacccggggacgccaggcggcggctgcggcg
gccttgcgggaggtgggggtcgacccggccacccagaagccgatggtgatcaaggacggc
cggttcggtccgtacgtcaccgacggcgagacgaacgcctcgctccgcaagggcgacgag
gtcgacacgatcaccgtcgaacgatcggccgaattgctcgccgagcgtcgggcgcggggg
ccggcacccaagcgcgcggtggtcaagaaggcggcgcccgcgaaggccggcacggcgaag
aagtccaccacagtcaagaagccggccgccaaggcggcggcgtccaaggccggtgccgcc
aaggctgccaccggcaccgccacggcgacgaagacccgcccggcggtcaagaagaccggt
gacacgggctga
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