Nocardiopsis alba: B005_1951
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Entry
B005_1951 CDS
T02218
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
nal
Nocardiopsis alba
Pathway
nal03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
B005_1951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nal03400
]
B005_1951
DNA repair and recombination proteins [BR:
nal03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B005_1951
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
B005_1951
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
UvrA_DNA-bind
AAA_21
AAA_16
DnaJ_CXXCXGXG
nSTAND1
AAA_29
AAA_22
RsgA_GTPase
APS_kinase
AAA_30
Anti-TRAP
Motif
Other DBs
NCBI-ProteinID:
AFR09170
UniProt:
J7LCP0
LinkDB
All DBs
Position
complement(2025239..2027530)
Genome browser
AA seq
763 aa
AA seq
DB search
MAEIDDHIRVRGARIHNLRNVDVSLPRDAMVAFTGVSGSGKSSLAFGTLYAEAQHRYLES
MAPYARRLLRQLPDPEVGSITGLPPAVALAQPRTSPSGRSTVGTLTMISNSLRMLLSRSG
ERPPGDEHLDSDAFSPNTAVGACPVCHGEGVEHEVTEASLVPDPSLSIADGAIASWPGAW
QGKNLRDILDTLGYDIHRPWRELPEREREWILFTDEEPVVTVHPVREAGRIHRPYQGRYT
SARRLVLKAYGTSASEARRRKAAEFMENRTCRECGGLRLRREALRVTFAGYNVAELARLS
LTDLVELLRPHNDDEEGATGVLTRDITGRAEILMELGLGYLSVAQPAPTLSHGELQRIRL
ATQLRTGLFGVVYVLDEPSAGLHPADREALSDILRRLRDGGNTVCLVEHNLDIVRGADWV
VDVGPGAGENGGRVLYSGPVEGLRDEPESVTRRYLFENVVPERPRHEARGVLELRGADRN
NLRGVDLDLPLGVFTAVTGVSGAGKSSLLAAVEERASERGRVVWVDQQPIGRTPRSNLAT
YTGLFDTVRRLFAATDEAKEYGYGAGRFSFNVTGGRCPTCEGEGFVSVELLFLPTTYAPC
PTCGGSRYNPDTLRVLYRGRTIADVLAMSVEEALEFFDEVPAVRRSLETLRAVGLGYLRL
GQSATELSGGEAQRIKLAGELQRRRVADTVYLLDEPTTGLHPYDTDVLMDRLRDLVESGA
TVVAAEHDMRVVAGADHVVDLGPGGGSAGGRIVPPRRAAPAAT
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atggcggaaatcgacgatcacatccgtgtccgcggggcgcgcatccacaacctgaggaac
gtggacgtgtcgctgccccgcgacgcgatggtggccttcaccggagtgtccggatcgggc
aagtcctcgctggccttcgggaccctctacgccgaggcccagcaccggtatctggagtcc
atggcgccctacgcccggcggctcctgcgccaactcccggacccggaggtggggtcgatc
accggtctgccgcctgcggtggcgctggcccagcccaggacgagcccctcgggccggtcc
acggtgggcacgctcaccatgatctccaactcgttgcggatgctcctgtcccgatccgga
gagcgcccaccgggagacgaacacctcgactcggacgccttctcccccaacacggccgtc
ggggcctgcccggtctgccacggcgagggcgtcgaacacgaggtcaccgaggcctccctg
gtcccggacccctccctgagcatcgccgacggggcgatcgcctcctggcccggagcctgg
cagggcaagaacctgcgcgacatcctcgacaccctcggatacgacatccaccgaccctgg
cgggagctgcccgaacgggagcgggagtggatcctgttcaccgacgaggaacccgtggtg
acggtccatccggtccgcgaggccggtcggatccaccgcccctaccaggggcggtacacc
agcgcccgtcgactggtgctcaaggcctacggcacctcggcgagcgaggcccggcgacgc
aaggccgccgagttcatggagaaccgcacctgtcgcgagtgcggagggctccggttgcgg
cgggaggccctgagggtcaccttcgcgggatacaacgtcgccgaactggcccgtctgtcc
ttgaccgacctggtcgagctgctgcgtcctcacaacgacgacgaggaaggggccaccggg
gtcctgacccgggacatcaccggccgggccgagatcttgatggagctgggactgggctat
ctgagcgtggcccagcccgcccccaccctctcccacggggaactacagcgcattcgtctg
gccacccagttgcgcaccggactgttcggtgtggtctacgtcctcgacgagccctcggcg
gggctgcacccggccgaccgcgaggcgctctccgacatcctgcgacggctgcgcgacggc
ggcaacaccgtctgcctggtggagcacaacctcgacatcgtgcgcggggcggactgggtg
gtcgacgtcggccccggggccggggagaacggtggccgtgtcctctacagcggcccggtg
gagggactgcgcgacgagccggagtcggtgacgcggcgctacctgttcgagaacgtcgtt
cccgagcgtcctcgacacgaggcccggggcgtgctggaactacgcggcgccgaccgcaac
aacctgcgcggcgtcgacctcgatctccccttgggggtgttcaccgccgtcaccggggtg
tccggggcgggcaagtccagcctgctggcggcggtggaggaacgcgcgtcggaacgcggg
cgcgtggtgtgggtcgaccagcagcccatcggtcgcacccctcgctccaacctggccacc
tacacgggtctgttcgacaccgtgcgcagactcttcgccgccaccgacgaggcgaaggag
tacggctacggcgcgggtcgcttctccttcaacgtcacgggcggacgctgtcccacctgt
gagggcgagggtttcgtctcggtggagctgctgttcctgcccaccacctacgccccctgc
cccacctgtggcggctccaggtacaaccccgacaccctgcgggtcctctaccgggggcgc
accatcgccgacgtcctggcgatgtcggtcgaggaggcgttggagttcttcgacgaggtg
ccggcggtgcggcgctccctggagaccctgcgcgcggtcggtctggggtatctgcgtctg
gggcagtccgcgaccgagctctcgggcggggaggcccagcggatcaagctcgcgggcgaa
ctccagcgtcgtcgggtggccgacacggtctatctattggacgaacccacgacggggctg
cacccgtacgacaccgacgtgctgatggaccggctccgggacctcgtggagtccggggcc
acggtggtcgcggccgagcacgacatgcgggtggtggccggcgccgaccacgtcgtcgac
ctgggcccgggtgggggctccgcgggcggtcggatcgtgccccctcggagagccgcaccg
gccgctacctga
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