Candidatus Nitrotoga arctica: NTG6680_2458
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Entry
NTG6680_2458 CDS
T08244
Symbol
pnp
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
narc
Candidatus Nitrotoga arctica
Pathway
narc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
narc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NTG6680_2458 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
narc03019
]
NTG6680_2458 (pnp)
03016 Transfer RNA biogenesis [BR:
narc03016
]
NTG6680_2458 (pnp)
Enzymes [BR:
narc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
NTG6680_2458 (pnp)
Messenger RNA biogenesis [BR:
narc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NTG6680_2458 (pnp)
Transfer RNA biogenesis [BR:
narc03016
]
Prokaryotic type
tRNA degradation factors
NTG6680_2458 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
KH_2
KhpA-B_KH
Motif
Other DBs
NCBI-ProteinID:
CAG9933707
LinkDB
All DBs
Position
Ntg6680:complement(2581049..2583160)
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AA seq
703 aa
AA seq
DB search
MSHYKKTLAYGNHQLTLETGEIARQASGAVVVSLDDTVVLVTVVGRKNAKPDQDFFPLTV
DYQERTYAAGKIPGGFFRREGRPSEKEVLTSRLIDRPLRPLFPEGFYNEVQIVATVISSD
NQIDSDIPAMIGASAALALSGIPFDGPIGAARVGYLNGEYVLNPTADELTLSKMDLVVAG
TEQAVLMVESEAQELPEDIMLGAVMFGHQQMQAVIQAIIEMADAVGAPDWDWNPPVHDIL
LSSKIAELAENSLQQAYAVREKQARTNQVDAIRTRVLEAVFASENGSVPKNHLNDLFQAL
ESKIVRGQILSGEPRIDGRDTRTVRPITIRTGVLPRTHGSALFTRGETQALVVATLGTAR
DAQKIDALQGEYLDRFMLHYNFPPYSTGETGRVGTPKRREIGHGRLAKRALVATLPSEDE
FGYSIRVVSEITESNGSSSMASVCGGCLAMMDAGVPVKTHVAGIAMGLIKEGNRFAVLTD
ILGDEDYLGDMDFKVAGSEQGITALQMDIKINGITSEIMQVALSQAREGRLHILGIMKQA
MPAVREEVSAHAPRMIKIKINPEKIRDVIGKGGAVIRALTEETGTTIDIDDEGNVTIASI
SGEGGMLAKRRIEDIVAEVEVGKIYEGPVVKLLDFGAIVNIMPGKDGLLHISQISNERIN
VVSDVLKEGQIVKVKVLEADEKGRLRLSMKALIVPEPGVPVSE
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcactacaagaaaacattagcgtatggcaatcatcagctcaccttggaaactggg
gaaatcgcacgtcaggctagtggagcagttgttgtcagcctggatgatacggttgtgctg
gttaccgtggtaggcaggaaaaatgccaaaccggaccaagatttcttcccattgactgtg
gattatcaggaacgtacctatgctgcaggcaagattccaggcggtttctttcgacgtgaa
ggacgtcctagcgaaaaggaagtcttgacgtctcgtttgatcgatcgtccgttgcgcccg
ttgttcccggaaggtttttataatgaagtgcaaatcgttgctacggtgatatcttccgat
aatcagattgattctgatattcctgccatgattggtgcctctgctgccttggcgctgtcc
ggaattccctttgatggtcccataggcgcggcgcgcgtcggttatcttaacggtgaatat
gtactcaacccgactgcagatgaacttactctatccaagatggatctagttgttgctggt
acggaacaggcagtcttgatggtggagtcagaagcacaagaactacctgaagacatcatg
ctgggcgcagtcatgtttggccaccagcaaatgcaagcagtgattcaggcaatcatcgaa
atggcggatgcagttggtgcaccggattgggattggaatccacctgttcatgacattttg
ttgagttcaaaaattgccgaactggccgaaaatagcttacagcaagcttatgccgttcgc
gagaaacaggcgcgtaccaatcaggtggacgcgattcgtacgcgcgttttggaagctgtg
tttgcatcggaaaatggttcggtaccaaaaaatcatcttaatgatctgttccaagcactg
gaatctaaaattgtgcgcggccagatactaagcggtgaaccgcggatcgacgggcgtgac
acacgtaccgtgcgtccaattaccatacgcactggcgtattaccacgcacgcatggttcg
gccctgtttacccgtggtgaaactcaggcactggtagtggccactctaggcactgcacgc
gatgcgcagaaaatcgatgcgttgcaaggcgaatatttggatcgctttatgcttcattat
aatttccccccatattccaccggcgaaactggtcgcgtcggtacaccaaagcgacgtgaa
attggccatggtcgtttggcaaagcgtgccctagttgcaacgttgccgagtgaggatgaa
ttcggatattccattcgcgtggtttctgaaatcactgagtcgaatggatccagttcaatg
gcttcagtatgtggcggttgcttggcgatgatggatgccggagtgccagtcaagactcat
gtggcaggtatcgccatgggtttgattaaagaaggcaatcgttttgctgtactgaccgac
attcttggcgacgaagattatctgggtgacatggattttaaggtggcggggtcagaacag
ggtattactgcactacaaatggacatcaagatcaacgggataacaagtgaaattatgcaa
gttgccttgagccaagcgcgcgaaggacgcttgcatattcttggtatcatgaagcaggcc
atgcctgcggtacgtgaagaggtgtcggcacatgccccacgcatgattaaaattaagatc
aacccggagaaaattcgtgatgtgattggcaagggcggtgctgtgatacgcgcgttaact
gaggaaacgggtactactatcgatatcgacgatgaaggtaacgtaactattgccagtatt
agcggtgaagggggaatgttagcaaaaagacgtattgaggatattgtagcggaagttgag
gtaggcaaaatttatgaaggcccggttgtcaaactgttggattttggtgcgattgtgaat
atcatgcctgggaaagatggtttgcttcacatctcgcaaatttcaaatgagcgcattaat
gttgtgtcggatgtcctgaaagaaggtcagattgtaaaagtcaaagtgctggaggctgat
gagaaaggacgcttacgcttgagtatgaaggctcttattgtgccagagcctggagttcct
gtttcagagtaa
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