Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise): 112393431
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Entry
112393431 CDS
T08872
Symbol
DHX38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
nasi
Neophocaena asiaeorientalis asiaeorientalis (Yangtze finless porpoise)
Pathway
nasi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nasi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
112393431 (DHX38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nasi03041
]
112393431 (DHX38)
Enzymes [BR:
nasi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
112393431 (DHX38)
Spliceosome [BR:
nasi03041
]
Complex C
Other components
Step II factors
112393431 (DHX38)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
T2SSE
nSTAND3
PhoH
AAA_30
Microtub_bd
Flavi_DEAD
AAA_16
AAA_7
Motif
Other DBs
NCBI-GeneID:
112393431
NCBI-ProteinID:
XP_024591451
UniProt:
A0A341AL15
LinkDB
All DBs
Position
Unknown
AA seq
1227 aa
AA seq
DB search
MEDTSEDSSIHRLEGTDVDSQVGGLIFKTKSASSEQHVFKAPAPRPSLLGLDLLASLKRR
EREEKDDGEDKKKSRISSYKDWEESKDDQKDAEEEGSDQAGHSSRKDRHYRSARVETPSH
PGGVSEEFWERSRQREREWREHGVYASSKEEKDRKKERSRDRDCDRKRDRDERDRNRHSS
RSERDGGSERSGRRNEPESPRHRPKDAATPSRSTWDEEDSGYGSSKRSQWESPSPTPSYR
DSERSHRLSSRDRDRSVRSRYSDDTPLPTPSYKYNEWADDRRHLGSTPRLSRGRGRREDG
EEGISFDTEEERQQWEDDQRQADRDWYMMDEGYDEFHNPLAYSSEDYVRRREQHLHKQKQ
KRISAQRRQINEDNERWETNRMLTSGVVHRLEVDDDFEEDSAAKVHLMVHNLVPPFLDGR
IVFTKQPEPVIPVKDATSDLAIIARKGSQTVRKHREQKERKKAQHKHWELAGTKLGDIMG
VKKEEEPDKALTEDGKVDYRTEQKFADHMKKKSEASSEFAKKKSILEQRQYLPIFAVQQE
LLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEE
MGGNLGEEVGYAIRFEDCTSESTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLN
TDVLFGLLREVVARRSDLKLIVTSATMDAEKFASFFGNVPIFHIPGRTFPVDILFSKTPQ
EDYVEAAVKQSLQVHLSGAPGDILIFMPGQEDIEVTSDQIVEHLEELENAPALAVLPIYS
QLPSDLQAKIFQKAPDGVRKCIVATNIAETSLTVDGIMFVIDSGYCKLKVFNPRIGMDAL
QIYPISQANANQRSGRAGRTGPGQCFRLYTQSAYKNELLTTTVPEIQRTNLANVVLLLKS
LGVQDLLQFHFMDPPPEDNMLNSMYQLWILGALDNTGGLTSTGRLMVEFPLDPALSKMLI
VSCDMGCSSEILLIVSMLSVPAIFYRPKGREEESDQIREKFAVPESDHLTYLNVYLQWKN
NSYSTIWCNDHFIHAKAMRKVREVRAQLKDIMVQQRMSLASCGTDWDIVRKCICAAYFHQ
AAKLKGIGEYVNIRTGMPCHLHPTSSLFGMGYTPDYIVYHELVMTTKEYMQCVTAVDGEW
LAELGPMFYSVKQAGKSRQENRRRAKEEASAMEEEMALAEEQLRARRQEQEKRSPLGSVR
STKIYTPGRKEQGEPMTPRRTPARFGL
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atggaggacaccagcgaggattcctcgatccatcgattggaaggcactgatgtggactcc
caggttggcggtcttattttcaagaccaaaagtgcatctagtgagcagcatgtcttcaag
gcccctgctccccgcccttcattgctgggactagacttgttggcttccctgaaaaggagg
gagagagaggagaaggatgatggggaggacaagaagaagtccagaatctcttcctataag
gactgggaagagagcaaggacgaccagaaggatgctgaggaggagggcagtgaccaggct
ggacacagtagccggaaagacagacattatcgatctgctcgggtagagactccatcccat
cctggtggtgtgagtgaagagttttgggaacgcagccggcagagagagcgggagtggcgg
gaacatggtgtctacgcctcgtccaaagaagaaaaggatcggaagaaggagaggtcgagg
gatcgagactgtgaccgcaagagagacagagatgagcgggatagaaacaggcacagcagc
aggtcggagcgagatggagggtcagagcgcagcggcagaagaaacgaacctgagagcccc
cgacaccggcctaaagatgcagccaccccttcaaggtctacctgggatgaggaggacagt
ggctatggctcctccaagcgctcacagtgggaatcgccctccccaacaccttcctatcgg
gattctgagcggagtcatcggctgtccagtcgagatagggacaggtctgtgaggagcagg
tactcagacgacacacctctgccaaccccatcctacaaatacaatgagtgggccgatgac
aggagacacctggggtccaccccacgtctgtccaggggccgagggagacgtgaggatggc
gaagaaggaatttcatttgacacagaagaggagcggcagcaatgggaggatgaccagagg
caagcggaccgggattggtacatgatggatgagggatatgatgagttccacaaccccctg
gcctactcctctgaggactacgtgaggaggcgggagcagcacctgcacaaacagaagcag
aagcgcatttcggctcagcggaggcagatcaatgaggataacgaacgctgggagaccaac
cgcatgctcaccagcggggtggtgcatcggctggaggtggacgacgactttgaagaggac
agtgcagccaaggtccatctgatggtgcataacctggtgcctccctttctggacgggcgc
atcgtcttcaccaagcagccagagcctgtgattccagtcaaggacgccacttctgacctg
gccattatcgctagaaaaggcagtcaaacagtgcggaagcacagggagcaaaaggaacgc
aaaaaggctcaacacaaacactgggaattggctggaaccaaactgggagatataatgggt
gtcaagaaagaggaagagccggataaagctctgacagaggacggtaaagtggactacagg
acagagcagaagtttgcagaccacatgaagaaaaagagcgaagccagcagtgaattcgca
aagaagaagtctatcctggagcagaggcagtacctgcccatctttgctgtgcagcaggaa
ctgctcacgattatcagagataatagcatcgtgatcgtggttggggagacagggagtggt
aagaccactcagctgacccagtacctgcatgaagacggttacacggactatgggatgatc
gggtgcacccagccccgccgtgtggctgccatgtcggtggccaagagagtcagtgaagag
atggggggcaaccttggtgaggaggtgggttatgccatccgtttcgaagactgcacttca
gaaagcaccttgatcaagtacatgactgatggaatcctgctgcgagagtccctccgggaa
gcggacctggatcactacagcgccatcatcatggatgaggcccacgagcgctccctcaac
accgacgtgctctttgggctgctccgggaggtggtggctcggcgctcagacctgaagctc
atcgtcacatcggccaccatggacgcagagaaatttgcttccttttttgggaatgtcccc
atcttccacatccctggtcgtaccttccctgttgacatcctcttcagcaagaccccccag
gaggattatgtggaggccgcagtgaagcagtctctgcaggtgcatctgtcgggggccccc
ggggacatccttatcttcatgcctggccaagaggacatcgaggtgacctcagaccagatt
gtggagcatctggaagaactggagaacgcgcccgccttggctgtgctgcccatctattcc
cagctgccttctgacctccaggccaaaatcttccagaaggctccggatggcgttcggaag
tgtattgttgccaccaacattgctgagacctctctgactgtcgatggcatcatgtttgtt
atcgattctggttattgtaaattgaaggtcttcaaccccaggattggcatggatgctctg
cagatctaccccatcagccaggccaatgccaaccagaggtcggggcgagccggcaggacg
ggcccaggtcagtgtttcaggctctacacccagagcgcctacaagaatgagctcttgacc
accacggtgcccgagatccagcggaccaacctggccaacgtggtgctgctgctcaagtcc
ctgggggtgcaggacctgctgcagttccacttcatggacccgcccccggaggacaacatg
ctcaactccatgtatcagctctggatcctcggggccctggacaacacaggcggtctgacc
tcgaccgggcggctgatggtggagttcccgctggacccggccctgtccaagatgctcatc
gtgtcctgtgacatgggctgcagctccgagatcctgctcatcgtctccatgctctcggtc
ccagccatcttctacaggcccaagggccgagaggaggagagcgaccaaatccgggagaag
ttcgcagtccctgagagtgaccatctgacctacctgaatgtctacctgcagtggaagaac
aacagttactctaccatctggtgtaacgatcatttcatccatgccaaggccatgcggaag
gtccgggaggtgcgggctcagctcaaggacatcatggtgcagcagcggatgagcctggcc
tcgtgtggcaccgactgggacattgtcaggaagtgtatctgtgctgcctatttccaccag
gcagccaagctcaagggaatcggggagtatgtgaatatccggacaggcatgccctgccac
ctgcaccccaccagctccctctttggaatgggctacaccccagactacattgtgtatcac
gagttggtcatgaccaccaaggagtacatgcagtgtgtgactgctgtggacggagagtgg
ctggcagagctgggccccatgttctacagcgtgaaacaggcaggaaagtctcggcaggag
aaccgccgacgggccaaagaggaagcctctgccatggaggaggagatggcactggccgag
gagcagctgcgggcccggcggcaggagcaggaaaagcgcagccccctgggtagtgtcagg
tctacaaagatctacaccccaggtcggaaagagcaaggggaacccatgacccctcgccgc
acaccagcccgctttgggctctga
DBGET
integrated database retrieval system
