Nocardia brasiliensis: O3I_003805
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Entry
O3I_003805 CDS
T02270
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nbr
Nocardia brasiliensis
Pathway
nbr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
O3I_003805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nbr03400
]
O3I_003805
Enzymes [BR:
nbr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
O3I_003805
DNA repair and recombination proteins [BR:
nbr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
O3I_003805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AFT98723
UniProt:
K0EP06
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All DBs
Position
840672..842987
Genome browser
AA seq
771 aa
AA seq
DB search
MAARRNFGGIEVELSNLDKVLYPATGTTKGEVIAYYSAIAPAMLPHIAGRAVTRKRWPNG
VDEPSFFEKNLPSHAPSWIERRTVRHSDRTVTYPLIESEAGMAWLGQQAALEVHVPQWRF
DDDERGPATRLVFDLDPGPGAGLAECAKVALAVRDMVEGIGLRAFPVTSGSKGIHLYVPL
DRELRGSGASTVAKQVASNLEKLHPDLVTATMSKSVRGGKVFLDWSQNNPSKTTIAPYSL
RGREQPNAAAPRSWRELESRKKLRHLRFDEVLARWQSDGDLLAELDPALPQRNTASAESG
PDALAKYRSMRDPARTPEPVPADRPVPGEDSRFVVQEHHARRLHWDVRLERGGVLVCWAV
PKGPPTSSKQNRLAVHTEDHPLEYLDFHGTIPKGQYGGGEMTIWDSGTYVTEKWRDDEVI
VRFHGERLNGRYALIQTNGNQWLMHLMREQHGDAAEPEPNGADTASTGRIIRVSSGPAPF
PRGLAPMLATPGDVADLHTDEWCFETKWDGFRLIAEISSGTMTLRSRKGNVVTARYPGIG
PLADELAGHEVVLDGEAVVFDDHGVANLGLLQADAARAVFVAFDVLYLDGTSLVRKRYSD
RRRVLEALAGTAPSLRVPPRLDGEGADAVRYSQDHGMEGVIAKRRDSVYLPGKRGHSWVK
QRNWRTQDVVVGGWRRSEAREFKSLLVGIPYEGRLIYVGRVGTGFNDADMQGLAGRLAKL
ERKTNPFDNDLTAEERKEAVWVTPKLRGSVRFMNWTETGRLWHPAWLGAQD
NT seq
2316 nt
NT seq
+upstream
nt +downstream
nt
atggccgcccgccggaacttcgggggtatcgaggttgagctgagcaacctcgacaaagtg
ctgtatccagccaccggcaccaccaaaggtgaagtcatcgcctactattcggcgatcgcg
cccgccatgctgccgcatatcgccggtcgagcggtcaccaggaagcgctggcccaacggc
gtcgacgaaccctccttcttcgagaagaaccttccgtcgcacgcgccgtcctggatcgag
cgacgcaccgtccggcactccgatcgcacggtcacctacccgctgatcgaatccgaggcg
gggatggcctggctcggccagcaggcggccctggaagttcatgtgccgcaatggcgtttc
gacgatgacgagcgagggccggccacccggctggtgttcgacctggatcccgggcccggc
gccgggctggccgaatgcgcgaaggtcgcgctggcggtacgcgatatggtcgagggcatc
ggcctgcgcgcgttcccggtgaccagcggtagcaagggaattcatctctatgtcccgctg
gatcgggagttgcgcggcagcggcgcgtcgacggtggccaagcaggtcgcgagcaatctg
gagaagctgcatcccgatctggtgacggccaccatgtcgaaatccgtccgcggcggcaag
gtattcctcgactggagccagaacaacccgtccaagaccaccatcgcgccctattcgctg
cgcgggcgggagcagccgaatgcggcggcgccccgtagctggcgggaattggagagccgg
aaaaagctgcggcacctgcgtttcgacgaagtcctcgcgcgctggcagtccgacggcgac
ctgctcgccgagctggatccggcgctgccgcagcgtaataccgcctcggcggagtcgggc
cccgacgccttggcgaagtaccggtcgatgcgtgatccggcgcgcactcccgagcccgtg
ccggccgaccggccggtgccgggggaggacagtcgcttcgtcgtgcaggagcaccatgcc
cggcggctgcattgggacgtgcggctggagcggggcggcgtgctggtgtgctgggccgtg
ccgaagggaccgcccacctcctcgaagcagaaccgcctcgccgtgcacaccgaggaccac
ccgctggagtacctggatttccacggcacgatcccgaaggggcagtacggcgggggcgag
atgacgatctgggactccggcacctacgtcaccgagaaatggcgggacgacgaggtgatc
gtccgattccacggcgaacgcctcaacgggcgctatgcgctgatccagaccaacggcaat
cagtggctgatgcacctgatgcgggaacagcacggcgacgcggccgagcccgagccgaac
ggtgcggacacggcctcgaccgggcggatcatcagggtgtccagcggtccggcgccgttc
ccgcggggactggcgccgatgctcgcgacccccggcgacgtcgcggatctgcacaccgac
gagtggtgcttcgagacgaagtgggacggcttccggctgatcgcggagatcagctccggc
acaatgactttgcgtagccgcaaaggcaacgtggtgaccgcgcggtacccggggatcggg
ccgctggccgacgaactggccgggcacgaggtggtgctcgacggtgaggcggtggtgttc
gacgatcacggtgtcgccaatctcggcctgttgcaagcggatgcggcgcgggccgtgttc
gtggccttcgacgtgctgtacctggacggcacttcgcttgtccggaaacggtattcggac
cggcgccgggtgctggaggcgctcgccggtaccgcgccgtcgctgcgggtgccgccgcga
ctggacggcgagggcgccgacgcggtgcgctacagccaggaccacggtatggaaggcgtg
atcgccaaacgcagggattcggtctatctgccgggtaagcgcgggcactcctgggtgaag
caacgcaactggcgaacccaggacgtggtggtcggcggctggcggcgcagcgaagcgcgc
gagttcaagtcgctgctcgtcggcattccgtacgagggcaggctgatctacgtcggccgg
gtcggcaccggcttcaacgatgccgacatgcaggggctggcgggacggttggcgaagctc
gaacgcaagacgaacccgttcgacaacgacctgaccgccgaggaacgcaaggaagcggtg
tgggtgacaccgaaactgcgcggctcggtgcggttcatgaactggaccgagaccggccgg
ctgtggcacccggcctggctcggcgcgcaggactga
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