Nocardia brasiliensis: O3I_021955
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Entry
O3I_021955 CDS
T02270
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nbr
Nocardia brasiliensis
Pathway
nbr03030
DNA replication
nbr03410
Base excision repair
nbr03420
Nucleotide excision repair
nbr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nbr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
O3I_021955
03410 Base excision repair
O3I_021955
03420 Nucleotide excision repair
O3I_021955
03430 Mismatch repair
O3I_021955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nbr03032
]
O3I_021955
03400 DNA repair and recombination proteins [BR:
nbr03400
]
O3I_021955
Enzymes [BR:
nbr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
O3I_021955
DNA replication proteins [BR:
nbr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
O3I_021955
DNA repair and recombination proteins [BR:
nbr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
O3I_021955
NER (nucleotide excision repair)
GGR (global genome repair) factors
O3I_021955
MMR (mismatch excision repair)
DNA ligase
O3I_021955
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
O3I_021955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
HHH_2
DNA_ligase_ZBD
BRCT
HHH
IclR
RNA_ligase
PTCB-BRCT
zf-ribbon_3
Motif
Other DBs
NCBI-ProteinID:
AFU02346
UniProt:
K0F453
LinkDB
All DBs
Position
complement(4982302..4984293)
Genome browser
AA seq
663 aa
AA seq
DB search
METGERIQELADRIVALRDAYYQGAPLVADADYDAIEDELRALIEAHPDLAPDPNPLEQV
GAPAVLHAPIRHARPMLSLEKATKPEQVAAFFNRFPGQAVVVMPKLDGLSLSLVYTDGRL
QRAVTRGDGTTGDDVTMLVRALVDGVPERIEVPGRVEVRGEAVMLRSTFLAYNTAHPDKP
LINPRNAAAGTLRAKDPATVAERRLQFFGFDLDTSDGGAADDLGEGLRALGVAGAQMRLC
ADAEQAQAAITAIEQGRNELDYDLDGAVLRLADREAYAAAGTRSNSPRGALAFKFAAEEK
TTVLREVIWDVGKTGKIVPVAWLEPVFVGGTTVTKATLANQEVIRARDIKVGDTVLVRRA
GDVIPFVAGVLDAAARTGEELEIVPPTSCPSCGQPVTEQGNSRELFCTNVSCPAQTVRRL
IHWASRAAADIDAIGQVWIERLAEAGILENPSDFYTLTKERLLEFDRVGEVSAQRMIDSI
ETSRQVGLRRALIGLAIPMASDGTAARLARAGFGSLEEVADAGEERLVAVEDIGPKVAAS
LVAHLTRLRPELERLRAAGVSLDVRAEDLPPVIAAGAPLAGKTVVITGAISDPRSGEKVA
RPTFQRLCEQAGAAAASSVSANTDLLITGAGVGDSKLTKAEKLGVEVVDQGKIWTLLIDA
KIV
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
gtggaaactggggaacgtatccaagagctcgcggaccgcatcgtggcgctgcgcgacgcc
tattaccaaggtgcgccgctggtcgcggatgccgactacgacgcgatcgaggacgaattg
cgggcgctgatcgaggcgcaccccgacctggctcccgatccgaacccgctggagcaggtc
ggcgcgcccgcggtgctgcacgccccgatccggcatgcgcggccgatgctctcgctggag
aaggcgaccaagcccgaacaggtggcggcgttcttcaaccggtttcccggccaagcggtg
gtggtgatgccgaagctcgacgggctgtccctgtcgctggtctacaccgacgggcgtctg
cagcgggccgtgacccggggcgacggcaccaccggtgacgatgtgacgatgctggtgcgt
gcgttggtcgacggcgtgcccgagcggatcgaggtgcccgggcgggtggaggtgcgtggc
gaggcggtgatgctgcgctcgaccttcctcgcctacaacacggctcatccggacaagccg
ctgatcaatccgcgcaacgcggcggcgggcacgctgcgggccaaggacccggccaccgtc
gccgaacgacgcttgcaattcttcggattcgatctggacacctccgacggcggcgccgcc
gacgacctgggggagggcctgcgcgcactgggtgtcgccggtgcgcagatgcgcctgtgc
gccgacgctgagcaggcgcaggccgcgatcaccgcgatcgagcagggccgcaacgaactg
gactacgacctcgacggcgcggtgctgcgactggccgatcgcgaggcctacgccgcggcc
ggcacccggtccaactcgccgcgcggcgcgctggcgttcaagttcgccgcggaggagaag
accacggtgctgcgcgaggtgatctgggacgtcggcaagacgggcaagatcgtcccggtg
gcgtggctggagccggtgttcgtcggcggcaccacggtcaccaaggccacgctggccaat
caggaggtgatccgggcccgcgacatcaaggtcggcgacaccgtgctggtgcggcgcgcg
ggcgatgtgatcccgttcgtcgcgggcgtgctcgacgccgcggcccgcacgggcgaggag
ctcgagatcgtgccgcccaccagctgcccgtcctgtgggcaaccggtgaccgagcaaggc
aacagtcgagagttgttctgcaccaacgtttcctgtccggcgcagacggtgcgcaggctg
atccactgggcctcgcgcgcggccgccgacatcgacgcgatcgggcaggtgtggatcgaa
cgcctcgccgaggcgggcattctggagaatccgtcggatttctacaccctcaccaaggag
cggctgctcgagttcgatcgcgtcggcgaggtctcggcccagcgcatgatcgattcgatc
gagaccagcaggcaggtcggcctgcgccgcgcgctgatcgggctggcgatcccgatggcc
tccgacggcaccgccgcccggttggcgcgggcgggattcggttcgctggaagaggtggcc
gacgcgggcgaggaacgtctcgtcgcggtggaggacatcgggccgaaggtcgccgcgtcc
ctggtcgcgcacctcacccggctgcggcccgaactggagcggctgcgcgcggcgggcgtc
tccctggacgtgcgcgccgaggacctgccgccggtgatcgcggcgggcgcgccgctggcg
ggcaagaccgtggtgatcaccggcgcgatcagcgacccgcgctccggtgagaaggtcgcc
cggccgacgttccaacgcctgtgcgaacaggcgggcgcggcggcggcctcctcggtctcg
gcgaacacggacctgctcatcaccggagccggcgtcggcgacagcaagctgaccaaggcg
gagaagctaggggtcgaggtggtcgatcaggggaagatctggaccctgctgatcgacgcc
aagatcgtctga
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