Nocardioides sp. JS614: Noca_1235
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Entry
Noca_1235 CDS
T00443
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nca
Nocardioides sp. JS614
Pathway
nca03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nca00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Noca_1235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nca03400
]
Noca_1235
Enzymes [BR:
nca01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Noca_1235
DNA repair and recombination proteins [BR:
nca03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Noca_1235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ABL80749
UniProt:
A1SG14
LinkDB
All DBs
Position
1311569..1312504
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AA seq
311 aa
AA seq
DB search
MESMRPMLATHGRQVPTGEAWAHEVKWDGVRALTEVRDGALRMTSRNENAITIAWPELAT
SPLGDRDLLVDGEIIALNERGLPDFRTLQDRMHVRKAATAARLSREVPATYMVFDVLRID
GRDLTGEPLDVRRELLAGLGLDGTWQVPGSYDDGPMLFEATLQQGFEGIVSKRRSSRYAF
GERSPHWLKFAHRHRVSYVVGGWRPQEGTADRLASLLVGEPTADGLLYRGRVGSGIGPKQ
GRALAELVARLGRPASPFADEVPRADAQGTRWLEPVLVVDIDTHGRGYQRLRQPSFQGVR
SDLTPEDLCST
NT seq
936 nt
NT seq
+upstream
nt +downstream
nt
atggagtccatgcgcccgatgctcgccacccatggtcggcaggtcccgacgggggaggcc
tgggcgcacgaggtgaagtgggacggggtccgcgcgctgaccgaggtgcgcgacggcgcg
ctgcggatgaccagccgcaacgagaacgcgatcacgatcgcctggcccgagctcgcgacc
agcccgctgggtgatcgcgacctgctcgtggatggcgagatcatcgcgctcaacgagcgc
gggctgccggacttccgcaccctccaggaccggatgcacgtgcgcaaggcggccacggcg
gcccggctctcgcgggaggtgcccgcgacctacatggtcttcgacgtgctccggatcgac
ggtcgcgacctgaccggcgagccgctcgacgtacgccgggagctgctcgccggcctcggc
ctggacggcacctggcaggtgccgggctcctacgacgacgggccgatgctgttcgaggcc
accctccagcagggcttcgagggcatcgtcagcaagcgccgcagctcccgctacgccttc
ggcgagcgttcgccgcactggctgaagttcgcgcaccggcaccgggtctcctacgtggtg
ggcgggtggcgcccccaggagggcaccgccgaccggctcgcctcgctgctcgtgggggag
ccgaccgccgacgggctgctctaccgtggccgggtgggcagcgggatcgggccgaagcag
gggcgtgcgctggccgagctggtggcccggctcggccgccccgccagcccgttcgccgac
gaggtgccgcgcgccgacgcgcagggcacccgctggctggagccggtcctggtcgtggac
atcgacacccacggtcgtgggtaccagcgcctgcgccagccctcgttccagggggttcgc
tccgacctcaccccggaggacctgtgctccacctga
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integrated database retrieval system
