Sciurus carolinensis (gray squirrel): 124960347
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Entry
124960347 CDS
T08117
Name
(RefSeq) vacuolar protein sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04140
Autophagy - animal
ncar04148
Efferocytosis
ncar05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124960347
04148 Efferocytosis
124960347
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
124960347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncar04131
]
124960347
Membrane trafficking [BR:
ncar04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
124960347
Hops complex
124960347
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS11_C
Clathrin
zf-C3HC4_2
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3H2C3
zf-RING_UBOX
zf-RING_5
TPR_11
DLP_helical
zf-HC5HC2H
zf-RING_11
zf-C3HC4_3
zf-ANAPC11
zf-RING-like
DUF5847
Motif
Other DBs
NCBI-GeneID:
124960347
NCBI-ProteinID:
XP_047375034
EnsemblRapid:
ENSSCRG00010018515
LinkDB
All DBs
Position
11:118291664..118303440
Genome browser
AA seq
941 aa
AA seq
DB search
MAAYLQWRRFVFFDKELVKEPLGNDGAAPGTAPASGSTVSKFLCLPPGITVCDSGRGSLV
FGDMEGQIWFLPRSLQLTGFQAYKLRVTHLYQLKQHNILASVGEDEEGINPLVKIWNLEK
RDGGNPLCTRIFPAIPGTEPTVVSCLTVHENLNFMAIGFTDGSVTLNKGDITRDRHSKTQ
ILHKGNYPVTGLAFRQAGKTTHLFVVTTENVQSYIVSGKDYPRVELDTHGCGLRCSALSD
PSQDLQFIVAGDECVYLYQPDERGPCFAFEGHKLIAHWFRGYLVIVSRDRKVSPKSEFTS
RDSQSSDKQILNIYDLCNKFIAYSAVFEDIVDVLAEWGSLYVLTRDGRVHALQEKDTQTK
LEMLFKKNLFEMAINLAKSQHLDSDGLAQIFMQYGDHLYSKGNHDGAVQQYIRTIGKLEP
SYVIRKFLDAQRIHNLTAYLQTLHRQSLANADHTTLLLNCYTKLKDSSKLEEFIKTKSES
EVHFDVETAIKVLRQAGYYSHALYLAENHAHHEWYLKIQLEDIKNYQEALCYIGKLPFEQ
AESNMKRYGKILMHHIPEQTTHLLKGLCTDYRPSLEGRGDRDAPGCRANSEEFIPIFANN
PRELKAFLEHMSEVQPDSPQGIYDTLLELRLQNWAHEKDPQIKEKLHAEAISLLKSGRFC
DVFDKALVLCQMHDFQDGVLYLYEQGKLFQQIMHYHMQHEQYRQVIAVCERHGEQDPSLW
EQALSYFARKEEDCKEYVAAVLKHIESKNLMPPLLVVQTLAHNSTATLSVIRDYLVQKLQ
KQSQQIAQDELRVRRYREETTRIRQEIQELKASPKIFQKTKCSICNSALELPSVHFLCGH
SFHQHCFESYSESDADCPTCLPENRKVMDMIRAQEQKRDLHDQFQHQLKCSNDSFSVIAD
YFGRGVFNKLTLLTDPPTARLTPSLEAGLQRDLLMHSKRGT
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggcggcttacctgcagtggcggcgcttcgtttttttcgacaaggaactagtgaaggag
ccgctgggcaatgatggggccgctcccggaaccgcgcctgcctctggatctacggtttcc
aagttcctttgcctccctcctggaatcactgtctgcgactcaggccgagggagcttggtc
tttggagatatggaaggccaaatatggttcttgccacgttccttacagcttacaggtttc
caggcctacaaactacgggtgacacacctgtaccaattgaagcagcacaatattctagca
tctgttggtgaggatgaagagggaatcaatcctttggtcaagatctggaacttggagaag
agagatggtggcaatccactctgcactcgaatcttccctgcgatcccaggaacagagcca
actgttgtgtcttgtttgactgtccatgaaaatctcaactttatggccatcggattcaca
gatggcagtgttacattgaacaaaggtgacatcactcgggaccgacacagcaagacccag
attttgcacaagggcaactatcctgttactggactggcctttcgccaagcaggaaagacc
actcacttgtttgttgtaacaacagagaatgttcagtcttacatagtttctggaaaggac
taccctcgtgtggagttggacacccatggttgtggcctgcgctgctcagccctaagtgac
ccttctcaggatctgcagttcattgtggccggtgatgaatgtgtctacctttatcagcct
gatgaacgtgggccctgctttgcctttgagggccataagctcattgctcattggtttaga
ggctaccttgtcattgtctcccgtgaccggaaggtttctcccaagtcagagtttaccagc
agggactcacagagctctgacaagcaaattctcaatatctatgacctgtgcaacaagttc
atagcctatagtgctgtctttgaggatatagtggatgtgcttgctgaatggggctccctg
tacgtgctgacgagggatgggcgggtccacgcactgcaagagaaggacacacagaccaaa
ctggagatgctatttaagaagaacttatttgagatggctattaacctggccaaaagccaa
catctggacagcgatggactagcccagatcttcatgcagtatggagaccatctctatagc
aagggcaaccacgatggggccgtccagcaatatatccgaaccattggaaaactggagcca
tcatatgtaatccgcaagtttctggatgctcagcgcatccataacctgacggcctatctg
cagaccctgcaccgacaatccctggccaatgctgaccataccaccctgctcctgaactgc
tataccaagctcaaggacagctcaaagttggaggagttcatcaagacaaaaagcgagagc
gaagtccactttgatgtggagacagccatcaaggttctccggcaggctggctactactcc
catgccctctatctggctgagaaccatgcacatcatgagtggtacttgaagatccagcta
gaggacattaagaattaccaggaagccctttgctacatcggcaaactgccttttgagcag
gcagagagcaacatgaagcgctatggcaaaatcctcatgcaccacataccagagcagaca
acccatttgctaaagggactttgtactgactatcgaccaagcctagaaggccgaggagac
agggatgctccaggctgcagggccaactctgaggagttcatccccatctttgcaaacaac
ccacgagagctgaaagccttcctagagcacatgagtgaagtgcagccagactcgccccag
ggcatctatgacacactccttgagctacggctgcagaactgggcccatgagaaggaccca
cagatcaaagagaagcttcatgcagaggcgatctccctgctgaaaagtggccgcttctgt
gacgtctttgacaaggcgctggtcctgtgccagatgcatgacttccaggatggagtcctt
tacctctatgaacaagggaaactgtttcagcagattatgcactaccacatgcagcatgaa
cagtaccggcaggtgatcgccgtgtgtgagcgccatggggagcaggacccctccttgtgg
gaacaggccctcagctactttgcccgaaaggaagaggactgcaaggaatatgtggctgct
gtgctcaagcatattgagagcaaaaacctcatgccaccccttctagtggtgcagactttg
gcacacaattctacagccaccctgtctgtcatcagagactacctggtccaaaaactgcag
aaacagagccagcagattgcacaggatgagctgcgggtgcggcggtaccgagaggagacc
actcgaatccgccaggaaatccaggagctcaaggcaagtccaaagattttccagaagacc
aagtgcagcatctgtaacagtgccttggagttgccctcagtccacttcctgtgtggccat
tccttccatcaacactgctttgagagttactctgaaagtgatgccgactgccccacctgc
ctccctgaaaaccggaaggtcatggatatgatccgggcccaggaacagaaacgagatctc
catgatcagttccagcaccagctcaagtgctccaatgacagcttctctgtgattgctgac
tactttggccgaggcgttttcaataaattgactctgctgactgaccctcccacagccaga
ctgacccccagcctggaggcagggctacagcgggatctgctgatgcactccaagaggggc
acttaa
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