Sciurus carolinensis (gray squirrel): 124980725
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Entry
124980725 CDS
T08117
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-3(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
ncar
Sciurus carolinensis (gray squirrel)
Pathway
ncar04151
PI3K-Akt signaling pathway
ncar04510
Focal adhesion
ncar04512
ECM-receptor interaction
ncar04820
Cytoskeleton in muscle cells
ncar04926
Relaxin signaling pathway
ncar04933
AGE-RAGE signaling pathway in diabetic complications
ncar04974
Protein digestion and absorption
ncar05146
Amoebiasis
ncar05165
Human papillomavirus infection
ncar05200
Pathways in cancer
ncar05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
ncar00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
124980725
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124980725
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124980725
09142 Cell motility
04820 Cytoskeleton in muscle cells
124980725
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
124980725
09154 Digestive system
04974 Protein digestion and absorption
124980725
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
124980725
09162 Cancer: specific types
05222 Small cell lung cancer
124980725
09172 Infectious disease: viral
05165 Human papillomavirus infection
124980725
09174 Infectious disease: parasitic
05146 Amoebiasis
124980725
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
124980725
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ncar04147
]
124980725
00536 Glycosaminoglycan binding proteins [BR:
ncar00536
]
124980725
Exosome [BR:
ncar04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
124980725
Glycosaminoglycan binding proteins [BR:
ncar00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124980725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
124980725
NCBI-ProteinID:
XP_047402559
EnsemblRapid:
ENSSCRG00010008016
LinkDB
All DBs
Position
3:171759417..171894016
Genome browser
AA seq
1670 aa
AA seq
DB search
MRLGSLRRPPALLLRLLLVLLAAAPAASKGCVCKDKGQCFCDGVKGEKGEKGFPGPPGSP
GQKGFPGPEGLPGPQGPKGCPGRTGLTGPKGVRGITGLPGFSGPPGLPGIPGHPGPYGLA
GLPGCNGSKGDRGFPGLPGTPGYPGVPGAPGLKGQKGVPAKGEDRELNGRGDPGLPGPPG
FQGLPGPPGFPGPMGPPGPPGFLGFPGASGPRGPKGHMGDNVIGQKGEQGVKGLTGPPGP
PGTVIVTLTGPDNRTDLKGEKGDKGAMGEPGPPGSPGPPGESYGSAKGAPGEPGSQGKPG
KGGTPGFPGTEGAKGNRGFPGLRGEDGIKGWKGDIGPPGFRGPTEYYDAYQEKGDEGIPG
PPGPKGTRGPQGPHGPPGVPGSPGSSSPGLRGAPGWPGSKGSKGERGPPGKVTVGLPGAP
GCPGSPGPAGSPGPPGPPGDTIFRKGPPGDHGLPGHLGPPGVPGVDGPKGEPGLLCIECP
YIPGPPGLPGVPGLDGVKGIPGGRGVTGLKGSPGSPGSAGLPGFPGFPGAQGDPGLKGRK
GETSQPRGPVGAPGDPGLRGQPGRKGLDGIPGTPGAKGLPGPRGEPALSGEKGDRGPPGD
PGSPGSPGSAGPAGPPGYGPQGEPGPKGTQGIPGAPGPPGEAGPKGESSVSTPVPGPPGP
PGRPGHAGPPGPPGIRGSMGKCNPGLPGPDGEPGIPGIGFPGPPGPKGDQGFPGTKGSPG
CPGKMGEPGLAGQPGFPGAKGEPALARPGEPGKPGFPGERGNSGENGEIGLPGLPGLPGI
PGKEGLDGPRGDPGQPGPPGERGPPGRCLEGPRGAQGLPGLNGLQGQPGRRGRTGPKGDP
GIPGLDRSGFPGEPGQPGKPGHPGEMGPPGHKGYPGTPGFLGPPGGRGMVGSMGHPGATG
PPGPPGNPGIQGQKGSLGIPGIKGERGPPGARGEQGDKGNQGPSQIVHLMGDKGEPGPKG
FAGNPGEKGNRGIPGFPGLKGREGPSGPPGPPGPRGDPGSPGNPGEPGPRGVPGSMGNMG
VPGSKGKRGPLGLPGLAGRPGFPGTHGLQGDKGEPGYSKDTKPGPPGPKGDPGLPGDVGK
KGERGPPGLPGTSGPAGPEGAPGSPGNPGHPGKPGPDGDLGLKGIKGFPGRPGIKGPPGL
PGFPDFLDQXVVRGNQGHDGIPGPAGEKGETGLLRAHPGPRGNPGAPGAKGDRGAPGWPG
LPGRKGTMGDVGPQGPIGIRGPPGPPGQPGAIIPGQKGNRGPPGSRGNPGDPGPPGPPGS
HVKGIKGDKGFMGQPGPKGPPGTIGDTGPPGHPGAPGTPGLPGLRGDPGFHGFPGMKGEK
GDPGFLGTVGPPGPIGPRGPPGARGDPGTLKVISLPGSPGPPGPPGQPGMQGDPGPAGSP
GNPGPCGPRGKPGKDGKPGTPGPPGEKGHKGHKGEPGPPGSDGLPGLKGKPGDPGLPATE
TRRRGFVFTRHSQATKIPSCPEGTEPLYSGFSLLFVQGNEQAHGQDLGTLGSCLQRFTTM
PFLFCDINEICNFASRNDYSYWLSTPALMPMNMTPITGRALEPFISRCTVCEGPAMTIAV
HSQTTTIPPCPHGWVSLWKGFSFIMFTSAGSEGAGQALASPGSCLEEFRASPFIECHGRG
TCNYYSNSYSFWLASLNPERMFRKPVPSTVKAGELEKIISRCRVCMKKRH
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctcggctccttgcggaggccgccggccctcctccttcgactcctgctggtgctc
ctggcggccgcgcctgcggcgagcaagggctgtgtctgtaaagacaaaggccagtgcttc
tgcgacggcgtcaaaggggaaaagggggagaaaggctttcctggaccccctggttcacct
ggccagaaaggatttccaggtcctgaaggcttgcctggaccacagggacccaagggttgt
ccaggacgtacaggactcactggtcccaaaggtgtaaggggaataactggattaccagga
ttttcaggccctcctggacttccaggcatcccaggtcatcctgggccttatggacttgct
ggtttgccagggtgcaatggctccaagggggaccgaggatttccaggacttccagggaca
ccaggctacccaggggtcccaggtgctcctggcctgaaaggacaaaagggtgttcctgct
aaaggagaagatagagaactcaatggaagaggtgaccctgggctgccaggacccccagga
ttccagggtttgccaggccccccaggttttccaggacctatgggcccacctggtcctcca
ggattccttggctttccaggagcttcaggacctagagggcctaagggtcacatgggcgat
aatgtgatagggcaaaaaggagaacagggtgtgaaaggattaacaggaccccctggacca
ccaggaacagttattgtgacgctgactggcccagacaacagaacggacctcaagggggag
aagggagacaaaggagccatgggagaacctggacctcccggatccccaggaccacctgga
gaatcatacggatctgcaaaaggtgctcctggagaacctggctcacagggaaaacctggt
aaaggtggtacccctggcttccctggcactgagggagccaagggcaacaggggcttccct
gggttaaggggtgaagatggcattaagggttggaaaggggacattggccctccaggattt
cgtggtccaacagaatattatgatgcataccaggaaaagggagatgaaggaattccaggc
ccaccaggacccaaaggaactcgtggccctcagggtccccatggtccccctggagttcct
ggaagtcctggatcatcaagtcctggcctcagaggagcccctgggtggcctggctcgaaa
ggaagcaaaggggagcgaggccccccaggaaaggtcacagtggggctccctggggcccct
ggctgtcctggttcaccaggccctgcagggtcaccaggacctccaggacctccaggtgac
accatttttcgcaagggtccacctggtgatcatggcctgccaggtcatctagggcctccg
ggagtcccaggagtcgatggacccaaaggagaaccaggcctgctgtgcatagagtgcccc
tatattccagggccccctggcctcccaggagtgccagggctggatggtgtcaaaggaatc
ccaggaggacgaggtgtgactggactgaaaggaagcccagggtccccaggaagtgcgggt
cttccaggatttccaggattcccaggagcccagggagatcctggacttaaaggaagaaaa
ggtgaaacatctcagccccgggggccagtgggtgccccaggggatcccggactcagaggg
caaccagggagaaagggcttggatggaattcctggaactccaggagctaaaggattacca
ggacctcgaggagaaccggccttgagtggtgagaagggggaccggggtcctccaggggat
ccgggttcccctgggtccccaggatctgcaggacccgctggaccacctggctatggaccc
cagggagagccaggtccaaagggcacccaaggaattcctggagcccctggaccacctgga
gaagccggtcctaagggagaatccagtgtttcaacaccggtcccaggccccccaggacct
ccagggcgccctggccatgctggtcccccaggtccacctggtatccgtggatccatgggg
aaatgtaatcctggtcttcctggacctgatggtgaaccaggaattccaggaattggattt
cctggacctcccggacctaagggagatcaaggttttccaggaacaaaaggatcaccaggt
tgtcctgggaaaatgggagagcccgggttagctggacagccaggcttcccaggagccaag
ggagaaccagcactagccaggcctggagaaccaggaaaaccaggttttccaggagaaaga
ggcaattctggggaaaatggagaaattggactccctggacttccaggtctccctggaatt
ccaggaaaagaagggcttgatggaccacgaggagatccagggcagcctgggccacctgga
gaaagaggacctccaggaaggtgcctagagggccccagaggagcccaaggacttccaggt
ctaaatggattgcaagggcaaccaggcagaagaggaagaacagggccaaagggagaccca
ggcattccaggcttggataggtcaggattccctggagaacctggccaaccaggaaaacca
ggtcatccaggtgagatgggaccacctggtcacaaaggatatccaggaactcccggattt
ttaggaccaccaggtggaaggggcatggttgggtcgatgggccatcctggagccactggc
cctccggggcctcctgggaacccaggcattcaggggcagaagggtagcctcggaatacca
ggaataaagggtgagagaggacctcccggagccagaggggagcaaggagacaaaggaaac
cagggtccttcgcaaatagtccacttaatgggagacaaaggagaaccagggcccaagggg
tttgcaggaaatccaggtgagaaaggaaacagaggcattccagggtttccaggtttaaaa
ggccgtgaaggaccatctggacccccaggaccaccaggccctcggggagatccaggaagc
cctgggaatcctggagaaccaggaccacgtggtgtgccaggaagcatggggaacatgggt
gtgccaggttctaaaggaaaaagaggacctttaggacttccaggtcttgctggaagacca
ggcttcccaggtactcatggtctccaaggagataagggagaaccaggttactcaaaagac
acaaaaccaggaccaccaggaccaaagggggatccaggattgccaggtgacgtgggaaag
aaaggagaaagagggccccctggcctgcctggaacatcagggcctgctggacctgaggga
gcccccggaagtccaggaaatcctggccacccaggaaagccaggtcctgatggtgacttg
ggacttaaaggaatcaaaggtttcccaggccgtccaggaataaaaggccctccaggtctt
ccaggattcccagacttcctggaccaataggtggtaagaggtaaccaaggacatgatgga
attcctggtccagctggagaaaaaggagaaacaggcttgctgagggcccatccaggtcca
agagggaacccaggtgctccaggtgccaagggagacaggggagcccctggctggcctggc
cttcctggcaggaagggaaccatgggagatgttgggcctcaaggacccattggcataaga
ggacccccagggccaccaggtcagcctggggcaatcatccctggccagaaaggaaatcgt
ggtccaccaggttcaagaggaaatccaggtgatccaggtccccccggacctccagggagt
catgtaaaaggcataaaaggtgacaaaggatttatgggccagcctggcccaaaaggtcca
cctggaactataggggatacagggccaccaggtcatccgggagcaccaggtaccccaggt
cttccagggctcagaggtgatcctgggttccatggatttccaggcatgaaaggagagaag
ggtgatccaggatttctgggaacagttggacctccaggaccaattgggccaagaggacca
cctggtgcacgtggagatcctggcacacttaaggtcatctcccttccaggaagcccaggg
ccacctggcccacctggacaaccagggatgcaaggagaccctgggccagcggggtcacca
ggaaacccaggaccctgtgggccaagaggtaaacctggcaaggatggaaaaccaggaact
cccggaccacctggagaaaaaggccacaaaggccacaaaggagagccaggaccacctgga
tcagatggattgccaggtttgaagggaaaacccggagatccaggcttgcctgcaaccgag
acaaggaggaggggctttgtcttcacgcgtcacagtcaagcgacaaagatcccctcatgt
ccagaagggacagagcctctctacagtgggttttctcttctctttgtacaagggaacgag
caagcccatggacaagaccttggaactcttgggagctgtctgcagcgatttaccacgatg
ccattcttattctgtgacatcaatgaaatatgtaattttgcatctcggaatgattattca
tactggctgtcaacaccagctctgatgccaatgaacatgactccaattactggcagagcc
ctggagccttttattagcagatgcaccgtttgtgaaggtcctgcgatgaccatagctgtt
cacagccaaaccaccaccatccccccatgtccccatggctgggtttccctctggaaagga
ttttctttcatcatgttcacaagtgcaggttctgagggcgctgggcaagcactggcatcc
cctggctcctgcttggaggaattccgagccagtccgtttatagaatgtcatggaagagga
acatgcaactactattccaattcctacagtttctggttggcttcattaaacccagaaaga
atgttcagaaaacctgttccatcaactgtgaaagctggggagttagaaaaaataataagt
cgctgtcgggtgtgcatgaagaaaagacactga
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