Notothenia coriiceps (black rockcod): 104954572
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Entry
104954572 CDS
T04920
Symbol
vps41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc04140
Autophagy - animal
ncc04148
Efferocytosis
ncc05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
104954572 (vps41)
04148 Efferocytosis
104954572 (vps41)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
104954572 (vps41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncc04131
]
104954572 (vps41)
Membrane trafficking [BR:
ncc04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
104954572 (vps41)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Clathrin
TPR_7
Vps39_2
Vps39_1
TPR_19
TPR_17
zf-RING_5
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
104954572
NCBI-ProteinID:
XP_010780003
UniProt:
A0A6I9NZ06
LinkDB
All DBs
Position
Unknown
AA seq
853 aa
AA seq
DB search
MAEVEQGRKQSEEFTDESEEEDSEEEPKLKYERLSNGVTEILQKDAASCMTVHDKFLALG
THFGKVFLLDIQGNVTQKFEISSVKINQISLDESGEHVGICSEDGKVQVFGLYTREGFHE
NFDCPIKVVALHPQFTRSNYKQFVTGGNKLLLYERNWLNRWKMSVLHEGEGSITNIQWKA
NLIAWANNVGVKIYDIGTKQRITNVLRDNVSLRPDMYPCSLCWKNNSTLIVGWGTSIKIC
VVKERNATEMRDLPSRYVEIVSAFETEFFISGLAPLADQLVTLYFVKENSDQMDEEFRAR
PRLDIIQPLPETCEEISSDALTVRNFQENECRDYRLEHSEGESLFYIISPKDIVVAKERD
QDDHIDWLLEKKKYEEALMAAEISFKNIKRHDVQKIGMAYINHLVEKGDYDSAARKCQKV
LGKNMDLWENEVYRFKTIGQLKAISQYLPRGDLRLRPAIYEMILHEFLKTDYEGFATLIR
EWPGELYNNMAIVQTVSDHLKRDPTNSTLLTTLAELYTYDQRYDRALEIYLRLRHKDVYQ
LIHKHNLFSSIEDKIVLLMDFDKEKAVDMLLDNEDKLSTDRVVEELADRPELLHVYLHKL
FKRDHHKGQKYHERQIGLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVEETVFLLS
RMGNCRRALQMIMEELEDVDKAIEFAKEQDDAELWEDLISYSIDKPPFITGLLNNIGTHV
DPILLIHRIKEGMEIPNLRDSLVKILHDYNLQILLREGCKKILVADSLSLLQKMHRTQMR
GVRADEENICESCHAAILPSDMAKPFSVVVFHCRHMFHKECLPSSGSIPGVQFCNICSAK
KRRPGHGILEIKQ
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagtggagcagggcaggaaacaaagtgaggaattcacagatgagtctgaggag
gaggacagcgaggaggagcccaagctgaagtacgagaggctctccaatggggtgacagaa
atcctgcagaaggacgcagccagctgtatgaccgtccatgacaagtttcttgccctaggt
acccattttggaaaggtcttcctgctggacattcagggaaatgtgacacagaaatttgaa
attagttcagtgaagatcaaccagatcagtctggatgaaagtggagagcatgtgggcatc
tgctccgaggatggaaaggttcaggtgtttggtctctatacaagagagggcttccatgag
aactttgactgtcccatcaaagtagtggcattacaccctcagttcaccagatcaaactac
aaacagtttgtcaccgggggaaacaagctgcttctgtatgaaaggaactggttgaatcgc
tggaagatgtccgttctgcatgagggcgagggctcaatcaccaacatccagtggaaagct
aacctcattgcctgggccaacaatgtgggagtgaaaatctatgatattggaaccaaacag
cggatcactaacgtgctgcgggataatgtcagcctgaggcccgacatgtacccctgcagc
ctgtgctggaagaacaacagcactcttattgttggctggggtacttccattaagatttgt
gttgtaaaagagcggaatgctacggaaatgagagatctgcctagccgctatgtggaaata
gtgtctgcgtttgagacggagttcttcatcagtggcctggccccgctggcggatcagctg
gtcaccctgtactttgtgaaggagaactctgatcaaatggatgaggagttccgtgcgcgc
cctcgtctcgacatcatccagcccctccctgagacctgcgaggagatctcttcagacgcg
ctgaccgtgcgcaacttccaagagaacgagtgcagagactaccgcctcgagcattccgag
ggagagtcgctcttctacatcatcagtcccaaagacatcgtcgtggccaaggagcgggac
caggatgaccatatcgattggctgcttgaaaagaagaaatatgaggaggcactgatggct
gcagagatcagcttcaaaaacatcaagaggcacgacgttcagaagatcgggatggcctac
atcaatcacctggtggagaaaggagactatgacagcgccgcgaggaagtgtcagaaggtt
cttggaaaaaacatggacttatgggaaaatgaagtatacaggttcaagaccatcgggcag
ttgaaggccatcagccagtatttaccccgaggggacctgcgtctcagaccagccatctat
gaaatgatcctgcatgaatttctcaaaacggactacgaggggtttgccaccctgatccgg
gagtggcctggagagctttataacaacatggccatcgttcagacggtctccgatcacctg
aagagagaccccaccaacagtacccttctcaccacgctggctgaactgtacacgtacgac
cagcggtacgacagagccttagaaatctacctgaggctgaggcacaaagacgtttaccag
ctgatccacaaacacaacctgttctcctccatcgaggacaagatcgtgctcctcatggac
tttgacaaagagaaagcagttgacatgcttctcgacaatgaagacaagttatcgacagac
agggtggtggaagaactggcagacaggccagagcttctgcatgtgtacctccataaactg
ttcaagcgggaccaccacaaaggccaaaaataccacgagagacagatcggcctgtacgct
gaatacgaccgacctaatcttttaccattcctgagagatagcacgcactgtcctcttgaa
aaggctctcgagatttgtcagcagaggaactttgtagaggagactgtcttcctgctcagc
aggatggggaactgccgacgggctctgcagatgatcatggaggagctggaggatgtggat
aaagccatagagtttgccaaggagcaggacgacgctgagctctgggaggatctcatctct
tactctatagacaaaccaccgttcatcactggcctccttaacaacattggtactcatgtg
gatcccatcttgctcatccatcgcataaaggagggcatggagatcccaaacctcagggat
tcactcgtaaaaatcctccacgactacaatctacagattcttctgagggaaggatgtaag
aagatcctggtggccgactccctctctctgctccagaagatgcaccgaacacagatgaga
ggagtccgggccgatgaggagaacatttgtgaatcctgccatgctgcaatactaccatca
gacatggccaagcccttcagtgtggtggtgtttcactgcagacacatgtttcacaaggaa
tgtttgccatcctcaggatcaattcctggggtgcagttttgtaacatctgcagtgcgaag
aagcgcaggccaggacatggaatcctggagattaaacagtaa
DBGET
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