Notothenia coriiceps (black rockcod): 104956678
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Entry
104956678 CDS
T04920
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
ncc
Notothenia coriiceps (black rockcod)
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ncc04131
]
104956678
Membrane trafficking [BR:
ncc04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
104956678
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GFIT
Motif
Pfam:
LRR_8
LRR_4
I-set
LRR_5
Ig_3
ig
Ig_2
LRRNT
V-set
FixQ
Motif
Other DBs
NCBI-GeneID:
104956678
NCBI-ProteinID:
XP_010782507
LinkDB
All DBs
Position
Unknown
AA seq
608 aa
AA seq
DB search
MFEGIAVHQWLCCGALFLLAAGAAFSSETRRSCPQPCRCNTVLQEVNCSDGQLTTVPNIL
PQNTKILNLTHNKIKSLVQQQFQTLTQLLDLDLNDNIMVLIEVEAFIGLQSLITLRLARN
HLKIIHVGAFDGLPKLELLDISRNEILVFLDFTFRDLTALQFIIAADNDLVFISRRAFTG
LTSLQELHLDGCNLTAVPTEALTQLGELRSLHFHRLGLTTLPNYAFRQLEHLKELVISQC
CLENLSGNSLFGLNLTSLTIRNCNLSAVPYTPLHHLVYLVFLDLSFNPIKFIYGNLFGEL
LRLQELHLVGGSLLRIDIGAFRGLAHFRLLNVSRNLLTTLEVGAFHSVDTLRNLGLDNNP
LACDCRLLWVVRRQPYLEFGGNPPTCRTSVQLQGWYFLDFTEAELPGLLTCRQPRILNRK
PQEVRVDQGHTVVFECNAEGDPVPSVTWISPQLKPLLPIGRIRALSNGSLEVRYAQPMDS
GAYFCVASNAAGNDSMPVSLHVRAFPASSKKNIRLKGWFAFPSASPGVSGDQNISFDVKT
LLVAATIGFLSFFSSVSVCFIFMLFWSKSKGQIKHTATIAYVPRSAESSNNEGKGNYMET
SRFTMKLI
NT seq
1827 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaggggattgccgtccaccaatggctgtgctgtggagctctcttcctgttggca
gcgggggcggccttctcctctgaaacccgccggtcgtgtccacagccctgccgctgcaac
accgtgctgcaggaggtcaactgctccgatggacaactcactacagtgcccaacattctc
ccgcagaacactaaaatactaaacttgacacataataagatcaagtctctggtgcagcag
cagttccagactttgacacaacttttagacttagatttgaatgacaatatcatggtttta
attgaggtggaagcatttatcggcttgcaaagtcttataactctgcgtcttgctcgcaac
cacctaaagattatccatgtgggggcgtttgatggtttgccaaaactagagttactggac
ataagcagaaatgagatccttgtttttctcgattttactttccgtgacttaactgccctt
cagtttattatagcagcagataatgacttagtttttatttctcgtcgagctttcactggc
ttaaccagtctgcaagagctgcatctcgatggctgcaacctcactgccgtgccgacagag
gcgctcactcagctaggcgagctgaggagtcttcattttcacagattgggcctcacaacg
ctgccaaactacgctttccgtcagctagagcatctcaaggaacttgtcatttctcaatgc
tgtctggagaatttgtcaggaaacagtctctttggactaaatcttacatccctgactatt
agaaactgcaacctcagtgctgtcccctacacccctttgcatcatcttgtatatcttgta
ttcctagacctttcttttaacccaattaaattcatttatgggaacctttttggagagttg
ctccggctccaagaactgcatttggtggggggatcattgctgcgtatcgatattggagca
ttccgaggtttggctcatttcagacttctgaatgtatccagaaaccttctcaccacactt
gaggtgggagccttccattcagtggacaccctgaggaatctgggactagacaacaaccca
ctagcatgcgactgccgcctgctgtgggtggtgcgaaggcaaccatatctggagtttggc
ggaaatccaccgacttgcagaacctcagtgcagttgcagggttggtattttctggacttt
actgaagctgaactcccaggtctgctcacatgtcggcaacctcgtattctgaaccgcaaa
cctcaagaagtgagagtagatcaaggacacacagtggtgtttgaatgcaatgcagaaggt
gaccctgtgccatcggtcacctggataagcccacagctaaaacctctattgcccattggc
agaatacgggctctctctaatggctcgctggaggttcgctatgcccaacctatggacagt
ggtgcttatttctgcgtggcatctaacgcggcaggaaatgacagcatgcccgtcagcctt
catgtccgagcctttccagcatcttccaaaaaaaacattcgtcttaaaggctggtttgcc
tttccgtccgcctcgccaggtgtgagtggagaccagaatatctcatttgatgtaaagacg
ttactggtagctgcaaccattggatttctttcattcttcagctctgtgagcgtatgtttc
atcttcatgctcttctggagtaagagtaaagggcaaataaagcacacagccacaatagca
tacgtgccacgaagtgctgagtcaagtaataacgaagggaaaggcaactatatggagaca
agcaggttcaccatgaaactaatatga
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