Notothenia coriiceps (black rockcod): 104962364
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Entry
104962364 CDS
T04920
Symbol
chd4
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 4 isoform X1
KO
K11643
chromodomain-helicase-DNA-binding protein 4 [EC:5.6.2.-]
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104962364 (chd4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ncc03036
]
104962364 (chd4)
Chromosome and associated proteins [BR:
ncc03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
104962364 (chd4)
Chromatin remodeling factors
NuRD complex
104962364 (chd4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
HDA2-3
PHD_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104962364
NCBI-ProteinID:
XP_010789102
UniProt:
A0A6I9PPC6
LinkDB
All DBs
Position
Unknown
AA seq
2045 aa
AA seq
DB search
MSGSEDDRDDYGAPEDRLMHDDEDEEISENETPKVKKKKKAKKSKESKGSKRRSRREEVP
ISSPEAMDVGPVEEVEEGSAILRSDSEGSDYTPGRKKKKRASSGKEKKRSSSGAERSSSK
KKDPEPEEEDDDDDDDDDDDSSEPKTSSQLLDDWGMEDIDHIFTEEDYRSLTNYKAFSQF
VRPLIAAKNPKIAVSKMMMVLGAKWREFSTNNPLRGAAAANAALATANVPAAVETMVAEA
APVVVAPPPPVEPQQPPPPPLRKAKTKEGKGPNCRKKSKPTPKAADKKNSAKTKKVAPLK
IKLGGFNSKRKRSSSEEDEPEVDSDFEDGSTNSVSVSEGSNSRSSRSKKKPSKSKPKKKK
EAEEGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHMVCLDPDMEKAPEGTWSCPHCEKE
GIQWEAREEVSEVEEDIAEPEMEEDDHHMEFCRVCKDGGELLCCDSCPSSYHIHCLNPPL
PEIPNGEWICPRCTCPAIKGKVQKILTWRWGEPPPPTPVPRPHDLAPDAPDPSPLAGRPD
REFFAKWSNLSYWHCSWVTELQLEIYCQVMFRNYQRKNDMDDPPPIDFGEGEEAAETSVK
RKSKNPMYAELEEKYLRFGIKMEWLMIHRIINHSLDRKNNVHYLIKWRELAYDQATWEAD
DMDVPEFDIFKVRYWNHREMVMGDEGKPGKKIKVKGRVKRPDKPPENPVVDPTIKFDRQP
DYLDVTGGKLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTAVFLSSLYKEGHSKG
PFLVGAPLSTIINWEREFEMWAPDMYVVTYVGDKDSRAVIRENEFSFEDNAIRGGKKASR
MRKDSSVKFHILLTSYELITIDMAILGSIDWACLVVDEAHRLKNNQSKFFRVLNNYPLQH
KLLLTGTPLQNNLEELFHLLNFLTPLRFSKLEIFLEEFADIAKEDQIKKLHDMLGPHMLR
RLKADVFKHMPSKTELIVRVELSPLQKKYYKFILTKNFEALNCKGGGNQVSLLNVVMDLK
KCCNHPYLFPAAAIEAAKIPNGMYDGNALTKAAGKLTLLQKMMRKLYDGGHRVLIFSQMT
KMLDLLEDFLENESYKYERIDGGITGGMRQEAIDRFNAPGAPQFAFLLSTRAGGLGINLA
TADTVVIYDSDWNPHNDIQAFSRAHRIGQNRKVMIYRFVTRASVEERITQVAKKKMMLTH
LVVRPGLGSKTGSMSKQELDDILKFGTEMLFKDELYGTLGDPKNKDDDGSVIHYDDRAID
RLLDRNQDATDDTELASMNEYLSSFKVAQYVVKDEEEEEEEVQREVIKQEESVDPDYWEK
LLRHHYEQQQEDLARNLGKGKRIRKQVNYNDGSQEDRGKSRADWQDDQSDGQSDYSVASE
EGDEDFDERTEANSRRPNRKGLRNDRDKPLPPLLARVARVGGNIEVLGFNSRQRKAFLNA
VMRYGMPPQDAFTTQWLVRDLRGKSEKEFKAYVSLFMRHLCEPGADGAETFADGVPREGL
SRQHVLTRIGVMSLIRKKVQEFEHVNGQWSMPWMAELEESKKAAALPDSPGKTPSTGTPA
DTQPNTPAPVDESSSKNEETVKDADKDTEKEVKKEGEVEKNGKESAKSSNEVISIPDDDE
KTPSAEPEAKKNGEEPMETDKPSNGETESVKEKEGEKEKEGEKEGESEEKSPEEGEETKS
PAEAKAEGSEVKPEETEVKAAEEKKDEEKKEEKMDTAPADDKKVDLKEEKEPQKPEEATK
LQNGDGSKESASTAVTPAISAATAAAAVVAAAASEEKKKAKTRFMFNIADGGFTELHSLW
QNEERAATVTKKTNEIWHRRHDYWLLAGIIQHGYARWQDIQNDVKFAILNEPFKGEMNRG
NFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNMSEDPSHPSMALNTRFSEVECLAESH
QHLSKESMSGNKPANAVLHKVLKQLEELLSDMKADVTRLPATIARIPPVAVRLQMSERNI
LSRLASRGSETQTQSQTQSQTQQMSQQQMSLQQMSQQSQQQQQQQQQQQQQQQQQQQQQQ
QQQLQ
NT seq
6138 nt
NT seq
+upstream
nt +downstream
nt
atgtctggaagcgaggatgacagagatgattatggagcccccgaggaccggttaatgcac
gacgatgaggatgaggagatctcggagaatgagactccgaaggtgaagaagaagaagaag
gcaaagaagagcaaagagagcaagggcagcaagaggcgctcacgcagagaggaggtcccg
atcagctccccggaggccatggacgtgggcccagtggaggaggttgaggaaggcagcgcc
atcctgcgctctgacagcgaaggcagtgactacactccaggacgcaaaaagaaaaagaga
gccagcagcggcaaagaaaagaagaggagcagttcgggggcagagaggagcagctccaag
aagaaagacccggagcccgaggaagaagatgatgacgacgacgacgatgatgatgacgac
agctcggagccaaagacgtcatcccagctccttgatgactggggcatggaggacatcgac
cacatcttcactgaggaagattaccgctctctgaccaactacaaggccttcagccaattt
gtcaggcccctcatcgcagccaagaaccctaagatcgccgtgtccaagatgatgatggtt
cttggggccaagtggcgtgagttcagcaccaacaaccccctgagaggagccgccgctgcc
aacgcagccctggccaccgccaacgtgccggctgcggtcgagaccatggtggcggaggcc
gccccggtcgttgtagcaccaccccctccagtagagcctcagcagccccccccaccgcct
ctacgcaaggccaagacaaaggaaggcaaaggccctaactgccgcaaaaagtcaaaacca
acacctaaagcagcagacaagaaaaatagtgccaagaccaagaaagtggctcctctcaaa
atcaaactgggaggcttcaacagcaagcggaaacgctcatcgagcgaggaggatgagcct
gaagtagacagcgatttcgaggacggcagcacgaacagtgtctctgtctcggagggatcc
aacagccgcagcagccgcagcaaaaagaagccttccaagagcaaacccaagaaaaagaaa
gaagcagaggaaggggacggctatgagacggatcaccaagactactgtgaggtttgccag
cagggcggagagatcatcctgtgtgacacctgcccccgagcgtaccacatggtctgcctg
gaccccgacatggagaaagcccccgagggcacgtggagctgcccacactgtgagaaggag
ggcatccagtgggaggccagagaagaggtttccgaagtcgaggaggacatcgccgagccc
gagatggaggaggacgaccaccacatggagttctgcagggtgtgtaaagacggtggagag
ctgctctgctgcgactcgtgcccctcgtcataccacatccactgcctcaacccgccactc
ccggagatccccaacggagagtggatctgcccccgatgcacgtgtccggccatcaagggg
aaggttcagaagatcctgacatggcggtggggcgaacctcctcctccaacaccagtccct
cgaccccatgacctcgcgccagatgcccccgatccctcgccactggcagggcggcctgat
agggagttcttcgccaagtggtccaacttgtcgtactggcactgctcctgggtcacagag
ctccagcttgagatttactgtcaggtgatgttcagaaactaccagcggaagaatgacatg
gatgatccgccgcccatcgactttggggaaggcgaggaggccgccgaaacaagtgttaag
aggaagagcaagaaccccatgtacgcagagctggaggagaaatacctccgctttggaatc
aagatggagtggctgatgatccaccgcatcatcaaccacagtttggacaggaagaataac
gtccactacctgatcaagtggagagagctggcgtacgaccaggccacctgggaggccgac
gacatggacgtcccagagtttgacatcttcaaggtgcggtactggaaccacagagagatg
gtgatgggagatgaggggaaacccgggaagaagatcaaggtgaaaggaagagtgaagcgg
cccgacaaacctccagagaaccctgttgtggatccgaccattaagtttgaccgacagcct
gattacctggacgtcacgggggggaagctgcacccctaccagctggagggtctcaactgg
ctgcgcttctcgtgggctcagggcaccgacaccatcctggccgacgagatggggttggga
aagacggtgcagaccgctgtcttcctctcctcgctatacaaagagggccactctaagggg
ccgttcctggtcggcgccccactatccaccatcatcaactgggagagagagtttgaaatg
tgggcccccgacatgtacgtggttacgtacgtcggtgacaaagatagccgagccgtcatc
agagagaacgagttctccttcgaggacaacgccattcgaggaggaaagaaagcctccagg
atgaggaaagactcgtcggtcaagttccacatcctcctgacctcctacgagctgatcacc
atcgacatggccatcctgggctccatcgactgggcctgcctggtggtggacgaggcccac
agactgaaaaacaaccagtccaagtttttccgggtgttgaacaactaccctctgcagcac
aagctgctgctgactggaacgcctctgcagaacaacctggaggagctcttccacctgctc
aacttcctcacaccgttgagattcagtaaactggagatcttcctggaggagtttgccgac
atcgcaaaggaagaccagatcaagaagctgcacgacatgctgggtcctcacatgctcagg
aggctgaaggccgacgtcttcaaacacatgccctccaagacggagctcatcgtccgagtg
gagctcagccctctgcagaaaaaatactacaaatttatcctgacgaaaaactttgaggct
ctgaactgcaaaggaggaggaaaccaggtttctctgctcaacgtcgtcatggacctcaag
aaatgctgcaaccacccctacctcttccccgctgctgctattgaagctgcaaagattccc
aacgggatgtacgatggcaacgctctcacaaaggctgctgggaaactgacgttgctgcag
aagatgatgaggaagctgtatgatggaggacacagagtgctcatcttttctcagatgacc
aagatgttggacttgctcgaagacttcctagagaacgagagctacaagtacgagaggatt
gatggagggatcactggcgggatgagacaggaagctattgatcgcttcaacgctcctggc
gctccgcagtttgccttcctgttgtcaacaagggccgggggtctgggtatcaacctggcc
acggccgacaccgtcgtcatctatgactccgactggaacccccacaacgacatccaggcc
ttcagcagagctcatcgtatcggtcagaacaggaaggtgatgatctaccgcttcgtcacc
agggcctcggtggaggagaggattactcaggttgccaagaaaaagatgatgctgactcac
ctagtggtccgacccggtctcggatccaagacgggctccatgtccaagcaggaactagac
gacatcctcaagtttggaacagaaatgctcttcaaggacgagttgtatgggactttagga
gatcccaagaacaaggacgacgacggcagcgtcatccactacgacgacagggccatcgac
cgtctgctagacaggaaccaggacgccaccgacgacacggagctagccagcatgaacgag
tacctgagctccttcaaggtggctcagtatgtggtcaaagacgaggaggaggaggaggag
gaggtgcagcgagaggtcatcaagcaggaggagagcgtggatccggactactgggagaag
ctgctgcgtcaccactacgagcagcagcaggaggacctagcccgcaacctgggcaaaggc
aaacgtatccgcaaacaggtcaattacaacgacggctcccaggaagaccggggtaagagc
agagctgattggcaggatgaccagtctgacggccaatcggattactctgtggcatctgag
gagggagacgaagactttgatgagcgaacagaagccaactctcgcaggccgaacaggaag
ggcctgaggaatgacagagacaagccgctgccccccctgctggccagggtggccagggtg
ggaggcaacatcgaggtgttgggtttcaactctcgccagaggaaggccttcctgaacgca
gtgatgcgttatgggatgcctccccaagacgcattcaccacccagtggctggtccgagac
ctgcgagggaaatctgagaaagagttcaaggcgtacgtctctctgttcatgcgtcacctg
tgtgagcccggagccgacggagccgagaccttcgcagacggtgtccccagagaagggttg
tcacggcaacacgtcctcacccgcatcggcgttatgtcactcattcgcaagaaggtccag
gagttcgagcatgtaaacggtcagtggtcgatgccctggatggccgagctggaggaaagc
aagaaggccgcagctctgcccgactccccggggaaaaccccgtccaccggcacccccgcc
gacacgcagcccaacacacctgctccagttgacgaatcctcttcaaagaacgaggagaca
gtgaaggatgcagacaaggacacggagaaggaggttaagaaagagggcgaggtggagaag
aacggcaaagagtcggcaaagagcagcaacgaggtgatctccatcccggacgacgacgag
aaaactccgtcagccgagccggaggctaagaagaacggggaggagcccatggagacggac
aaaccgagcaacggagaaacggagagcgttaaggagaaggagggagaaaaggagaaggaa
ggcgagaaggagggagagagcgaggagaagagtccagaggaaggagaggaaaccaagtcg
cctgccgaggccaaggcggaggggtcagaggtcaaacctgaggagaccgaggtcaaagca
gcagaagaaaagaaagacgaagagaagaaagaagagaagatggacaccgctcctgcagat
gataagaaagtggacctgaaggaggagaaggagcctcagaagccggaggaggcgaccaag
ctgcagaacggagacggcagcaaggagagcgcctccactgccgtcacacccgccatctct
gctgccaccgccgccgccgctgtggtggccgccgccgccagcgaggagaagaagaaggcc
aagaccagattcatgttcaacatcgctgacggaggattcacggagctccactctctgtgg
cagaacgaggagcgggcggccaccgttaccaagaaaaccaatgagatctggcaccgtcgt
catgactactggctgctggctggcatcatacaacatggttatgcccgctggcaggacatc
cagaacgacgtgaagttcgccatcctcaacgaacctttcaagggagagatgaaccgagga
aacttcctggaaataaagaacaagttcctcgccaggaggttcaagctgttggagcaggcg
ctggtgatcgaggagcagctacgtcgtgccgcctacctcaacatgtccgaggacccctcc
cacccctccatggccctcaacacccgcttcagtgaggtggagtgtctggccgagtcccac
cagcatctcagcaaggagtccatgtccgggaacaagccggccaacgccgtcctgcacaaa
gtgctgaagcagttggaggagctgctgagcgacatgaaggcggatgtcacccgcctcccg
gcaaccatcgcccggataccgccggttgccgtgcgactccagatgtcagagaggaatatc
ctgagccggctggcgagtcgaggatcagagacacagacacagtcacagacacagtcacag
actcaacagatgtcgcagcagcagatgtcgctgcagcagatgtcgcagcagtcgcagcag
cagcagcagcagcaacagcagcaacagcagcaacagcaacagcagcagcagcagcagcag
cagcagcagctgcagtag
DBGET
integrated database retrieval system
