Notothenia coriiceps (black rockcod): 104964317
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Entry
104964317 CDS
T04920
Symbol
prpf38b
Name
(RefSeq) pre-mRNA-splicing factor 38B
KO
K12850
pre-mRNA-splicing factor 38B
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104964317 (prpf38b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ncc03041
]
104964317 (prpf38b)
Spliceosome [BR:
ncc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
104964317 (prpf38b)
Complex C
U4/U6.U5 tri-SnRNP related factors
104964317 (prpf38b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
104964317
NCBI-ProteinID:
XP_010791367
UniProt:
A0A6I9PTA1
LinkDB
All DBs
Position
Unknown
AA seq
455 aa
AA seq
DB search
MANVGNQLPTQAVSKPASGKHGNVLPLWGNEKTMNLNPMILTNVLSSPYFKVQLYELKTY
HEVVDEIYFKVNHAEPWEKGSRKTAGQTGMCGGVRGVGTGGIVSTAYCLLYKLFTLKLTR
KQLMGLITHSDSPYIRALGFMYIRYTQPPADLVDWYDGFLDDEEELDVKAGGGCVMTVGE
MLRSFLTKLEWFSTLFPRIPVPVQKSIDVKMKARPRKVPVKETPEEEPEVEEPGKQGEQR
GSRTPKQTPSPKKSPKRSRSRSHHREKERHGPSFDRELERERDRQKKERGGGERGDREKR
RSRSADRNQDRRERRKSGSRDRKNERRDKERDGGDDKNKRKEREHHKDRGVEGERSKEKK
SRGETDERRHKEDRERHREERKAKKQSQSHSRERKHKSGGEEKSRKRDSREKDRERDGEQ
RSHKRSGSKDRSHHQREPNNDHSKHIGRRRSQSTE
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atggctaacgtcggaaaccagctaccaacacaggccgttagcaagcctgcatcaggaaaa
catggaaatgtattgcccctgtggggcaacgaaaagactatgaacctcaacccaatgatt
ctcacaaatgtgctgtcttcgccgtatttcaaagttcagctttacgaacttaagacgtac
catgaagttgtggacgaaatctacttcaaggtgaatcacgctgagccttgggaaaaggga
agcagaaagactgcaggccagactggaatgtgcggaggggtgcgtggagtcgggactggt
ggtattgtgtctactgcttactgtcttctatacaaactgtttactctcaagctgactcgc
aaacagctaatgggtctgatcactcactcagactctccttacatcagagcacttggcttc
atgtacataagatacactcagcctccagcagatttggtagattggtacgacggcttcctg
gatgatgaggaggagcttgacgtgaaggcagggggcggctgtgtgatgaccgttggagag
atgctgcgctccttcttgaccaaactagagtggttctccactctgttcccccgcattccg
gtgcccgtgcagaaatctattgacgtgaagatgaaggccaggcctcgtaaagttcccgtg
aaagagacgccggaggaggaacccgaggtggaggagccagggaagcaaggagaacaacgc
ggctccaggacaccaaaacagacaccaagtccaaaaaagtcccccaaacggtcaaggagc
aggagccaccaccgcgagaaagaacgacacggccccagctttgaccgagagctggagagg
gagcgggaccgccagaagaaagagagggggggcggggagcgaggggacagggagaaacgg
cggtcccgcagcgcagacagaaaccaagaccggagggagcgtagaaagagtggcagcagg
gacagaaagaacgaacgcagggacaaagaaagagacggcggggatgacaagaacaagagg
aaagagagggaacaccataaagacagaggcgtagagggggagaggtccaaagagaaaaag
agcaggggggagactgatgagaggaggcataaagaggacagggaaaggcacagagaagag
aggaaggccaaaaagcagagccaaagtcacagtagagagaggaagcacaagagcgggggg
gaagagaagagcaggaagagagacagcagggagaaagacagggagagggacggagaacag
cgctctcacaaacgtagtggtagcaaagacaggagccatcatcagcgagagcccaataat
gaccatagtaaacatattggacgcagaaggagtcagagcactgagtaa
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