Notothenia coriiceps (black rockcod): 104964835
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Entry
104964835 CDS
T04920
Symbol
arid1a
Name
(RefSeq) AT-rich interactive domain-containing protein 1A
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
104964835 (arid1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ncc03000
]
104964835 (arid1a)
03021 Transcription machinery [BR:
ncc03021
]
104964835 (arid1a)
03036 Chromosome and associated proteins [BR:
ncc03036
]
104964835 (arid1a)
Transcription factors [BR:
ncc03000
]
Eukaryotic type
Helix-turn-helix
ARID
104964835 (arid1a)
Transcription machinery [BR:
ncc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
104964835 (arid1a)
Chromosome and associated proteins [BR:
ncc03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
104964835 (arid1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
104964835
NCBI-ProteinID:
XP_010792020
UniProt:
A0A6I9PW84
LinkDB
All DBs
Position
Unknown
AA seq
2370 aa
AA seq
DB search
MAAQVASAATLNTSPPSELKKPDRDPKEDSVPGDKQSDKKQPGLGSGSPGRGDLQDGADG
GNAGGGGEPEMKNGNGNPPRANNNNQNDSVGPEGNNHPGLVHHHGTAFPPPSYGYSQHYG
RAPFHQHGGQQSPGMAAAAGPVVQSSNMMEPYQPNSHEHGFSNHQFNNYNQFPNRTPYPG
QAYGMNSPRSTQAPTAGGQPANVKQQPPAGGPTPTAMAGTYSNQRYNIGNPQPTSTPTLN
KLLTSPSSTRGYPNYPSNDYSSQEGATKGPADMASSGLYGGSNPGWQQRSLHPSPMSPGS
AGQPLARSQPPGPIDPMGKMRGQPYGAGSPYSQQSQQGPPTGPQQGPGYPGQGYGPPGPQ
RFPVGMQGRSPGAMGSVPYGPQMGSYGQQGPGGYGSQGQAPYYNQPGQAPHPSQQQTPYS
QTPPGQPGGQAPYPGQTHPAPTSASHTQGGQPYQQPPQSQGPLPGPSQGPTQSQPPYSQS
SAPQSGQSLYAQQQGPPSQAPQQPSSQEPPGSQGQSNYPGSTQGPQQPPSQPQPQPQPQP
QPQPQPQPQPQPPQQPPGHSQHPQGQPAAYSQNPQQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQAQQSPYQRFPPPPQQEVSQDSFQSNAPPSTQPKS
GPEDSQGRPSSLPDLSGSIDDLPTGAESALSPGVSTSGVSSSQGEQSNQAQSPFSPHTSP
HLPGIRGPSPSPAGSPAGASTPRTGPLSPANMPGTQMPPRPSSVHSDGSLHPAMSQSPMA
QDRGFMQRNPQMPPYGSPQSASALSPRQSSGGQMHPGIGPYQQNNSMGGYGQQGGQYGPQ
GYPRQPGYGNMPNANYTGPGMGPMNAMAGQGGGPPYAGMPPGRMPPHQMGPRPYGPNMGP
NMAPNMAPNMAPNMAPNMAPNMGPNMGPNMGNMPPQVGSGMCPPPGMNRKPQDPSAMQHP
ATNSMHNRMPGYPSMSPGMMGSGPPYGPPMNNMPGMMNPQGGSPYPMGPNMANNSSGMAP
SPEMNNKMNNKVDGGATPKPEPKSKKSNSSTTTNEKITRLYELGPEPERKIWVDRYLAFV
EEKAMPMTNLPAVGRKPLDLFRLYMSVKEIGSMAQVSKNKKWRDLATSLNVGTSSSAASS
LKKQYVQCLYAFECKIERGEDPPPEIVTDNKKNQAAKVQPPSPAGSGSLQGPQTPQSTSS
SMAEGGDLKPPTPASTPHTQMPPMTPGSRSSVNLQDPFSEGSDPAFPRKNLTPNSAYQSG
MNPADVQGRMGSFEPNKDPFGNMRKVGEHFLPANPGPNSGVGDHQQQQPPQPQQQQHQPP
FNRGLPGAIGTMPMGPRQQYPYGPGYDRRSEPGMGPEGNMGSGAPQPNPMMPANADAGMY
SPNRFPPQQPRHDSYGNQYAGQGTPPGGSYQNQQPGMYPQQQGYKRPVEGGYPPSKRHEA
EYSGPFHGGQQPPQQQQQQQQQQPGGAPAPSSGQQESYNQYSGSGPYPGPDRRPPGPSNQ
FPFPFGRERMQGSTGPNAQPNMPPQMMQPGPEGPQGGMWQGPRDMNYQNYPGRQGGPPQG
PGYPGMNRSEEMMSSEQRMNHDGQWGGQMGPRQPSYGPAGPGQPMPRPVQSTYQSLQGVQ
NHIPQVSSPASMPRPMDSRTSPSKSPYMHGVMKMQKAGPPVPASHIVPPPVQSPLIRRDM
PFPPGSIEASHPILKPRRRLTVKDIGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDN
SISTFELNTLPGLLELVVEYFRRCLIEVFGILREYEVGDPGQRTLLDPDALKRDWDKEGE
ELRAEDMEQEDGDEDEDEEEEQETEAPVRVKEEEEQCSESQAQGEKTEDEDRKNKGSSSD
QTGSSQSLAAHERPQQASKFDKFPLKVIRKKDPYPANNNHGKMQEFDSGLIHWSAGGGDS
TEHIQTHFEPRKDFLEPRQRICVPSKLLKQRVPEVYLENSLLTDEEERKNQDEEERSKET
SSSEKAAEAEKTSPSLDNEEERKNDSETKTVEKVDHQENNRPIPSLDILFTPRAKQTGII
LEDEPHSKDEGPLIALANWQDSLARRCICISNIVRSLSFVPGNDHEMSKHPGLLLMLGRL
ILLHHRHPERKQAPLTYEKDEDSEEGLGQRDEWWWDCLELLRENTLVTLANISGQLDLSI
YPESICLPLLDGLLHWAVCPSAEAQDPFPSLGPHSALSPQRLVLETLSKLSIQDNNVDLI
LATPPFSRLEKLYGSLVRLIGDRKVAVCREMAVVLLANLAQGDTVAARAIAVQKGSVGNL
LGFLEDSLAATQLQQSQSSLLHLQGMHFEPTSPDMMRRAARALHALAKVEDNHSEFTLQE
SRLLDLSVSPLMNSLVSHVICDVLFLVGQS
NT seq
7113 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcaggtcgccagcgccgccactcttaacactagcccgccttccgaacttaaa
aagccggatcgagaccccaaggaggattcggtaccgggagataagcagtcagacaaaaag
cagccgggcttgggcagcggatcgccgggccggggggatctgcaggacggggccgacggt
ggaaatgcagggggaggaggggaacctgagatgaagaacgggaatgggaacccgcccagg
gctaacaataataaccagaatgactctgtcggaccggagggaaataaccatcccggtttg
gtgcatcatcacggcaccgcgtttcctcctccttcgtacggatatagtcagcactacggt
cgggccccttttcatcaacatggcggacaacaaagccctggcatggcagctgctgcgggt
ccggtcgttcagtcgagcaacatgatggagccgtatcaacctaattcacacgagcatggc
ttttccaaccaccagtttaacaattataaccagtttccgaacagaactccctatccgggc
caagcgtacggtatgaactcccctcgcagtacccaggcgccgacagctggggggcagcca
gctaacgttaagcagcagccacccgcgggaggaccaacaccaacagcaatggctggaact
tacagtaatcagagatataacattgggaaccctcaaccgacatccacaccgacactcaac
aagctcctgacctcccccagctctacgcggggttatccaaactacccgtctaacgactac
agcagccaggagggcgctactaagggaccagcagacatggccagcagcgggctgtacgga
gggagcaacccgggctggcaacaaagaagccttcacccgtcgcctatgagcccgggaagt
gcagggcagccgctcgctagaagccagccacctggtcctattgacccaatggggaaaatg
agaggtcaaccatatggagcaggcagtccatacagtcagcagtcacagcaagggcctccc
acaggtccacaacaggggccaggttaccctggtcagggttatggccctccaggtcctcaa
agatttccagtgggaatgcaaggacgttcacctggagccatgggtagcgtgccgtatggt
cctcagatgggatcttatggacagcagggaccaggaggctatggctctcagggccaggca
ccgtattacaaccagcccggccaggctcctcacccgagccagcagcagaccccttactcc
cagaccccaccaggacaaccggggggccaggcgccttacccagggcaaacccaccctgca
ccgacttctgcttcacacacccagggaggacaaccttatcagcagcccccacaatcccag
gggccgctgccaggcccgtcccaagggcctacacagtctcagccaccttattcccaatcc
tcagccccacaatctggccagtctctctacgcccagcagcagggtcctcccagtcaggcc
ccacagcagccaagttcccaggaacccccaggatcacagggccagtccaactacccaggg
tccacacaggggcctcagcagcccccctcgcagccccagccacagccccagccacagccc
cagccacagccccagccccagccccagccccagcctccacagcagccaccaggacacagc
caacacccacagggccagcctgcagcgtactcacagaaccctcagcagcagcagcagcag
cagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcagcaacaacaacaa
caacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacagcagcagcag
cagcagcagcagcagcaagcacaacagtcaccttatcagcggtttcctcctccaccacag
caggaggtatcgcaggactcatttcagtccaacgcccctccatccactcagcctaaatct
ggcccagaggacagtcaaggccgcccctccagccttccggacctgtcggggtccatcgat
gacctgcctacaggtgcagagagcgccctgagccccggtgtgagcacgtcaggtgtgtcg
agcagccagggcgagcagagtaaccaggctcagtcgcccttctctcctcatacgtctccc
cacctgccaggcatccgagggccttcaccttcaccagctggctcccctgccggtgccagc
acgccccgcacaggaccgctgtcacctgccaacatgccagggacccagatgcctcccagg
ccatcgagtgtccattcagatgggagtctacatcctgcaatgagccagtctcccatggcg
caggacagagggtttatgcagagaaaccctcagatgcccccttatggctccccccagtca
gcctctgcactgtccccgcgacagtcctcagggggacagatgcatcctgggataggccca
tatcagcagaacaactccatgggtggttatggacagcaggggggacaatatggcccacaa
ggttatccacggcaacctggctatggaaacatgcccaacgcaaactacactggtccgggc
atgggcccaatgaatgccatggcaggacagggtgggggaccgccgtatgccggcatgccc
cccggaaggatgcctcctcatcaaatggggccacgtccctatggcccaaacatgggtcca
aacatggcccccaacatggcccccaacatggcccccaacatggcccccaacatggcaccc
aacatgggtcccaacatgggccctaacatgggcaacatgccaccccaggtaggctcaggc
atgtgtcctcctccaggcatgaacagaaagccccaggacccctctgccatgcagcatcct
gccaccaactccatgcacaacaggatgcctggataccccagcatgtctccaggaatgatg
ggctccggcccaccctatggccctcctatgaacaacatgcctggaatgatgaaccctcaa
ggtggatcaccttatcccatggggccgaacatggccaataactcaagtggcatggccccc
agtccagaaatgaacaataagatgaataataaagtagatgggggtgcaacacccaagccg
gagcccaaatccaagaagtccaactcttcgaccactaccaatgagaagataacccgtctg
tatgagttaggaccggagccggagagaaagatatgggtggaccgatatttggcttttgtg
gaagaaaaagccatgccgatgaccaacctgcccgctgtgggccgcaaaccccttgatctc
ttccgactgtatatgtcagtcaaagagatcggaagcatggcacaggtgagtaagaataag
aaatggcgcgatctggccacatccttgaatgtgggtacatccagcagtgctgccagttct
ttgaagaaacagtacgtccagtgtctgtacgcctttgagtgcaaaattgagcgaggcgag
gaccctcctcctgagattgtgacagacaacaaaaagaaccaagctgctaaggtccagcca
ccctctccagctgggtcaggctctctgcagggtccacagacaccccagtccaccagcagc
tccatggctgaggggggggaccttaaacctcccaccccagcctccactcctcacacccag
atgcccccaatgacacccgggtccaggagcagcgttaacctgcaggaccccttctctgaa
ggaagcgaccctgctttccccaggaaaaacctgacgcccaactctgcctatcagtccggc
atgaacccggcggacgttcaggggcgcatgggctccttcgaacccaacaaggaccccttt
ggtaacatgcgcaaagtcggggaacacttcctaccagctaacccaggccctaacagcggg
gtgggtgaccatcagcagcagcaaccgccacaaccacagcagcagcaacatcagcctcca
ttcaacagaggactgcctggggccataggcacgatgcccatggggcccagacagcagtat
ccctatggaccaggctacgacaggagatcggagccgggaatgggcccagagggcaacatg
ggatccggggctcctcagccaaaccctatgatgcctgccaatgccgacgcagggatgtat
tcgccaaatcgcttcccaccacagcagccacggcatgattcctatggtaatcagtatgct
ggacagggaacgccccctggaggctcctaccaaaatcagcagcctggaatgtacccacaa
caacagggttacaagcgtcctgtggaagggggttatcctccatcaaaacgtcatgaggcg
gagtacagtgggcccttccatggcggacaacaacctccgcaacagcagcagcagcagcag
cagcagcagccaggaggggcccctgcaccctcttcaggacagcaagagtcgtacaatcag
tacagcggcagcgggccctaccccggccctgatcggcgtccacctggcccaagcaatcag
ttcccattcccatttggccgtgaacgtatgcagggttcgacggggcccaacgctcagccc
aacatgccccctcagatgatgcagccaggccccgagggtcctcagggaggtatgtggcag
gggccgcgagacatgaactatcagaactaccccggtcggcagggcggcccaccccaggga
cccggttaccctggcatgaaccgctcggaggagatgatgtcgtcagagcagcgcatgaat
cacgatggccagtgggggggtcagatgggccctcggcagccttcttatggtccagccggg
cccggccagccaatgcctcgcccggtacagtccacctaccagtcccttcagggggtgcag
aaccacattccacaggtgtccagccccgcctccatgccccgccccatggatagcaggaca
tcaccgagtaaatctccctatatgcacggagtcatgaagatgcagaaggccggccctcca
gtgcctgcgtctcacatagtgccccctccggtgcagtcgcccctaataaggcgagacatg
cctttccccccggggtctatagaagcctcccatccaatcctgaaaccacggcgaagactc
accgtaaaagatattggaaccccggaggcctggagagtcatgatgtctctaaagtctggt
ttgttggctgaaagtacgtgggccttagacaccatcaacatcctcctgtatgatgacaac
agtatttccacctttgagctcaatacgttacccggcctgctggagttggtggttgagtat
ttcagacgctgcctcatcgaagtctttggcattctgcgggagtacgaggtgggagaccct
ggccagaggacactacttgatcctgatgccttgaaacgagactgggacaaagaaggagaa
gagcttcgagctgaggatatggaacaagaggacggagacgaggacgaagatgaagaggag
gaacaagaaacggaggctccagtgcgtgtgaaagaagaggaagagcagtgctctgagtct
caggctcaaggggagaagacagaagatgaggacaggaagaacaagggttcctcctctgac
cagacgggctcatcgcagtccttagctgcccatgaaagacctcaacaggccagcaagttt
gacaagttccctctaaaggtgatacgaaagaaggacccatatccagctaataataatcac
ggcaaaatgcaagagtttgacagcgggttaattcattggagtgctggcgggggagactca
acagagcacatccagactcactttgagccacgcaaagacttcttggaaccacgacaacga
atatgtgtgccctcaaagttgctgaagcaacgcgtcccagaagtttacctggaaaatagt
ttgctaactgatgaagaggaaaggaagaaccaggacgaagaagaaaggtcaaaagagact
tcttcctctgagaaagctgcggaggcagagaagaccagcccctctctggacaatgaggag
gagagaaaaaacgattctgagacaaaaacagtggagaaagttgatcaccaggagaataat
cgacccattccttcccttgacattctcttcaccccgagggcaaagcagactggcatcatc
ctggaagatgagcctcacagtaaagacgaggggccactcatcgcactggctaactggcag
gactctttagcccgccgctgcatttgtatctccaacattgtccggagcctctcctttgtg
ccaggcaacgaccacgagatgtccaaacatcctgggctgctgctgatgctgggccgcctg
atcctgctccatcacaggcaccctgagcgcaaacaagcaccgctcacctacgagaaagat
gaggattcagaagagggcttgggccaaagggatgaatggtggtgggactgcttggagctc
ctgagggagaacacactggtcactttggcaaacatctcaggccaactagacctctcaatc
taccccgagagcatctgcctgcctctgttggatggtcttctccactgggctgtttgccca
tcggcagaggcccaggaccccttcccctccctgggcccccacagtgctttgtcacctcag
agactggtgctggaaacacttagcaaactaagcatccaagacaacaatgtggacctcatc
ctggccactccgccattcagtcggttggagaagctatacgggagcctggtgcggctaatc
ggagacaggaaggttgccgtctgcagggagatggccgtggtcctattggccaacctagcc
cagggtgataccgtcgcagctcgagcaatcgcggtgcagaaaggcagcgtggggaacttg
ctgggcttcctggaggacagtctggccgccacgcagctccagcagagccagagctctctg
ctacacctacagggaatgcacttcgagcccacaagtccagacatgatgcggcgggctgcc
cgggcgctgcacgccttagccaaggtggaggataaccactcagagttcacactacaagag
tcccgactcctcgacctttcagtgtctccccttatgaactcactggtttctcatgttatc
tgtgatgtactctttttggtgggccagtcatga
DBGET
integrated database retrieval system
