Notothenia coriiceps (black rockcod): 104966273
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Entry
104966273 CDS
T04920
Name
(RefSeq) transcription intermediary factor 1-alpha-like isoform X1
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
ncc
Notothenia coriiceps (black rockcod)
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ncc01001
]
104966273
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ncc04121
]
104966273
Enzymes [BR:
ncc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
104966273
Protein kinases [BR:
ncc01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
104966273
Ubiquitin system [BR:
ncc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
104966273
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Bromodomain
zf-B_box
PHD
zf-RING_UBOX
zf-RING_5
zf-C3HC4_2
DUF5054
zf-C3HC4
zf-RING_2
FemAB_like
Motif
Other DBs
NCBI-GeneID:
104966273
NCBI-ProteinID:
XP_010793761
UniProt:
A0A6I9PS02
LinkDB
All DBs
Position
Unknown
AA seq
1095 aa
AA seq
DB search
MDESAEKVVTDDIVIIVENEAESLPAEEERLKQQGTFGLMDTCPVCKLSFHNREPKLLPC
LHSFCKRCLPAPFRSADPRRDTQGQLDNNKSLGAIRCPVCRQECWEMDMLDNFFVKDSAE
MPSSTVEKSSQVCMSCEDNTEATGYCVECVEFLCVTCIEAHQRVKFTRDHTIRQKEEMSP
EAVGMSTQKPVFCDVHKQEPLKLFCETCDRLTCRDCQLLKHKDHNYQFLEDAYRNHRQYL
ENMTQQLQDKRRAIAEVSGCINNGLQQVDENRKSVTNEIKKSICGLIMEINRKGKILVNH
LEALTKDHELGLKKQQDDVNSLSRHLDHVINFTKWATASHSGTALLYCKRLILFQIHYLM
RASCNPSIVPQSSVRFQCRSGFWATNVDLGSLVVERVPGTRPPNPTLNLPTLNQPAGPRA
EAPPGSMSASAQQRQSTLAQLQMQTSVVPLSKVDKISQQPQRQPPPNHWSWYQNVRLPGP
PGPPPPTRPIHGGSSPSQGPPPSMAQPGRRYGSSQPSTRSPTSSMLHNTGFPSHQVSAAQ
SLRELIHGSYPPKPMEMLQGASRYPPPPSAGAAAHMSHHQRGLAEASFLKRSEAGGSVPS
ITISIPIPKPSFAPSQASATTDKMSTFNYIAAVQARQNSPMAKPFSSDRGTGTTPWKQTT
EAPAAPPSKRRRRASPGPVIVIKDEPEDEDEVRFVQSSLPDSSTGAQSIPRPQIKVSVPV
SLPASESGKEQHPAAEPESEKRAEPVEDPNEDWCAVCQNGGELLCCDKCPKVFHLACHIP
ALNESPSGEWFCSLCRDLAAPEMEYDCKGKGDPVSEGFPPAERRRCERLLLRLFCNDFST
DFQQPATPSETRRYKELIKTPMDLSIVKKKLESKAQGGEGYSGPDGFVADVRLIFLNCAK
YYKSVQATSDVGSAGLYLEDYFEEQVKLVYPERLFPGGREEQMIPPLEDEIEEEEEMMGE
GMAPIEDDKPISPAGEGIPPVEEDSTVEETTVPVEENKSETEEKEMEKEMETEMETDVTA
AEEGDIPPSEEAKQDKETPVKEAQSSPAADSETKDKSADSSLENESSELHTDTTEDPPDT
QKEESAPADTAKEGE
NT seq
3288 nt
NT seq
+upstream
nt +downstream
nt
atggatgagagtgccgaaaaggttgtcaccgacgacattgtcattatcgtggaaaacgag
gcagaaagtttgccagccgaggaagagaggctgaaacagcaaggcaccttcgggctcatg
gatacctgccccgtctgcaagttaagcttccacaacagagagcccaaactactaccatgt
ctgcactctttctgcaagaggtgtctcccagcccccttcaggagtgctgatccaagacgt
gacacgcaaggtcaactcgacaacaacaaatcattgggtgccatacgatgtccagtatgc
agacaggaatgctgggagatggacatgttggacaatttctttgtcaaagattctgctgag
atgccgagcagcaccgtggagaaatccagccaggtgtgtatgagctgcgaagacaacaca
gaggcaacgggttactgcgtggagtgcgtggagtttctgtgtgtgacatgtatcgaggcg
caccaaagggtcaagttcaccagggatcacaccatacgccagaaagaggagatgtctcca
gaggcagtaggtatgtccacacagaagcccgtgttttgtgatgtccacaagcaggaaccg
ctgaagctgttctgtgagacgtgcgaccggctcacctgtcgggactgtcagctgctcaag
cacaaggatcacaattaccagtttttggaggatgcgtacaggaaccacaggcagtatctg
gagaacatgacgcagcagttgcaagacaaaagaagggccatcgcggaagtgtccggctgt
atcaacaacggactccagcaagtcgatgagaacaggaagtcggtcactaatgaaataaag
aagtccatttgtggcctgatcatggagatcaacaggaaggggaagattctggttaaccac
cttgaggctctgactaaggatcacgagctgggtttgaaaaagcagcaagacgacgtcaac
tccctgagcaggcacctggatcatgtgatcaactttaccaaatgggccacagccagccac
agtggaacagccctgctgtactgcaagagactgatcctctttcagatccattacctaatg
agagcgagctgtaatccctcaatcgtccctcagagttctgttcgctttcagtgtcgctct
ggtttctgggccaccaatgtagaccttggttctcttgttgtagaaagggtccctggcacc
cggccgcccaaccccaccctcaacctccctaccctcaaccaacctgcaggtcccagagca
gaagccccccccggaagtatgtccgcctcagctcagcagcgacagagcacgctggctcag
ctccagatgcagacatctgttgttcctctgtccaaggtggacaagatttcacagcagccc
caaaggcaacccccccctaaccactggtcctggtaccaaaatgtcagactcccagggccc
cccggtcccccacccccaaccagacccatccacggagggtcctccccctcccaaggtccc
cccccaagcatggcacagccaggccgcagatatgggagctcccagcccagcactagaagc
cccacctcctccatgctccacaacacaggcttcccctcccatcaggtcagtgctgcgcag
tctctgagagagctgatccatggctcctatcctcctaaacctatggagatgttgcagggt
gcgtcccgctacccaccgcctccatctgctggagcagctgcacacatgtcccaccatcag
cgtggcctagcggaggcttccttcctgaagaggagtgaggcaggtggatccgtcccctcc
atcaccatctccatccccatccccaaaccaagcttcgctccaagccaagcttcagcaact
acggacaaaatgagcaccttcaattacatagcagcagttcaagcaaggcaaaactcccca
atggccaaaccgttttcttcagacagaggcacagggacgactccctggaagcagactacg
gaggctccagctgctccaccatccaagagaagaagaagagcgtcaccggggccagtcatc
gtcatcaaggacgaaccagaggacgaggatgaagtcagattcgtgcagtccagcctgccg
gacagcagcaccggggctcagtcgattcctcggccgcagatcaaggtgtccgtcccggtc
tccctccctgcgtcagagtctgggaaagagcagcatcccgcagcagagccagagtctgag
aagagggcggagccggtggaagatcccaacgaggactggtgcgccgtctgtcagaacgga
ggggagctgctctgttgcgacaaatgtcccaaagtctttcacctggcctgccacatcccc
gctctgaacgagtccccgagcggggagtggttctgttcgctctgcagagacctcgccgct
cctgagatggagtacgactgcaagggcaaaggcgaccccgtctctgagggattcccgccc
gcagaaagaaggaggtgtgagaggctgctactgcgtctgttctgcaatgacttcagcact
gacttccagcagcccgctactccatcagagacgaggaggtacaaggagctgattaagacc
ccgatggatttgtcgatagtgaagaagaaactggagtccaaggcgcagggaggtgaaggc
tatagcggtccggacgggtttgtcgcagatgtccggctcatatttttaaactgtgcgaaa
tactacaagtctgtacaggcgacctcagatgtggggagtgcaggtctgtacctggaggac
tactttgaggagcaggtgaaactcgtctacccagaaaggctcttccccggagggagggaa
gagcagatgatcccccctttggaggacgagatcgaggaggaggaagagatgatgggggaa
ggcatggctcccattgaagacgataaaccgataagtcctgcaggagaaggaatcccccct
gtggaggaggactcgactgtggaagaaacaacagttccagttgaggaaaataagtctgaa
acggaggagaaggaaatggagaaggaaatggagacagaaatggagacagatgtaacggca
gctgaggagggagacattcctccatcagaggaggcaaagcaggacaaggagacacctgtg
aaggaggcacagagctctccagctgcagatagtgaaacaaaagacaagtcagctgacagc
tccctagaaaatgagagctctgagctccatacagacacaactgaggatcccccggacacc
cagaaggaggagtcggctcctgcagacacagccaaagagggggagtga
DBGET
integrated database retrieval system
