Notothenia coriiceps (black rockcod): 104966594
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Entry
104966594 CDS
T04920
Name
(RefSeq) neurocan core protein-like
KO
K06794
neurocan core protein
Organism
ncc
Notothenia coriiceps (black rockcod)
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ncc00535
]
104966594
00536 Glycosaminoglycan binding proteins [BR:
ncc00536
]
104966594
04091 Lectins [BR:
ncc04091
]
104966594
Proteoglycans [BR:
ncc00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
104966594
Glycosaminoglycan binding proteins [BR:
ncc00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
104966594
Lectins [BR:
ncc04091
]
C-Type lectins
Group 1: Proteoglycan core proteins
104966594
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Xlink
EGF
V-set
hEGF
Lectin_C
zf-C2H2_10
EGF_2
Ig_3
zf-CCHC
I-set
DUF1117
Motif
Other DBs
NCBI-GeneID:
104966594
NCBI-ProteinID:
XP_010794083
UniProt:
A0A6I9Q1I2
LinkDB
All DBs
Position
Unknown
AA seq
1201 aa
AA seq
DB search
MVNMRKVTHQTISEEMSKTVLLPCLFTLRPGASSSHEPPRIKWTKVWGQRGSDGLQKEQS
VLVAKDNVVKVKKAFQGRVMLPGYNENRYNASLALSGLRSSDSGLYRCEVVVGINDEQDT
VPLEVTGVVFHYRAPHDRYALSFADAKRVCVENSAVIATPGQLQATFADGYDNCDAGWLS
DQTVRYPIQSPRPGCYGDREDSPGVRNYGDRSPDELFDVYCFAKQLHGEVFHSTVTEKLS
LATASTHCHSLGAQLATVGQLYLSWQAGLDQCDPGWLADGSARYPINVPRKNCGGDEPGV
RTVYNKPDRTGFPDTAALYDAYCYRAHHTEGVQAVEAQALYQGPDPAAEPISPVTEAQRS
ASLSKTSTWTGLVDLDTAGVSSIAGNNDSSEISEEHVVIHLRPEEVWDEKQASQEESEGP
KSSSAMSLPDQENHGGSAHEEEDGGYYGSSDTPTSSSIASSTPQSQTSNSVLAEFMNTLV
KPFRYLTAGKEVEEKRLSVLKVKEGENQTQGEASSSNLSIPRPSGNKGSMDNAILEHRSL
SSRTPTSGLQAPEEGLSEQEKEVMPLVRLVPAIQNDDTTTQPGEKASSTSSNSPPSSSSN
GFTATGPNERSPPTEHVMVSGPQGPRGGPAFSSDPSNHFRWAIKSMRASKLGPPGKAPFL
GKRPSWEPMEAKSGPVEVMTLPTSLRRDIPENYSGQGKDQDGEDVNAARVASGEDKEMEG
SGEGSNFPDGFGLKANTTSLNQTEAATVAEHTTLSHWQLVPQPTTTPSDTAEARGEILYV
HRPTDHLSSAPSRRGESSSNPGFTPLSTKNSEETSGKEVVTSTPEARMEVLTTSEVTTVE
LLTTRDTQRTDPTTTATTTENSSESATTEEPSISISWVQEDREKTTPNLSATPATGDESQ
TTTGVVQLTTFASDSNVGATQMESRSAVSESFVVGSRWTPFKNPKSEDHKTTKDNKDTNN
PFGMLIPNWAFGLVPSVENNPCQTNPCLHGGSCLQEGDGYSCYCPQGFSGESCEIDIDDC
QSNPCQNGGTCIDEINSFVCLCLPSYGGATCEKDTEGCEHTWRKFHGHCYRYFSRRHTWE
DAEKDCREHSGHLASVHSLAEQNFIRAEGGSLLMCSSRTVCLEPVAQRIALQHNMRKSTT
HRLLIPKPRGANAAGENEAFTEHERRFLQRLCIYCGQAGHIRANCSTRPKEQAQQPGEGR
W
NT seq
3606 nt
NT seq
+upstream
nt +downstream
nt
atggtgaatatgcggaaggtgacccatcagaccattagcgaggagatgtccaaaactgtt
ctcctcccctgcctcttcaccctgcgccccggggccagttcatcccatgagcccccccgg
atcaagtggaccaaggtctggggccagagaggctccgacggcctccagaaggaacaatcg
gtcctggtggctaaagacaatgtggtcaaggtgaagaaggcctttcagggtcgtgtgatg
ttgcctggttacaatgagaaccgctacaatgccagtcttgctctgtcagggctgcgctcc
agcgactcgggcctgtaccgctgcgaggtcgtggtgggcatcaacgatgagcaggacaca
gttcccctggaggtcacaggtgttgtatttcactaccgggcccctcatgaccgctacgcc
ctgtcctttgctgacgccaagagagtgtgcgtggagaactcagcagtcatcgcaacacca
ggacagctgcaggctacctttgctgatggatacgacaactgtgatgcaggctggctgtct
gaccagactgtgcggtatcccatccagtcgccacggcccggttgctatggcgatcgcgag
gactcacctggagtccgtaactacggtgataggtcacccgatgagctgtttgatgtctac
tgctttgctaagcagcttcacggtgaagtcttccactccactgtgacggagaagttgagt
ctggccacagcctccacccactgccactccctgggagcccagctggccaccgtggggcag
ctgtacctctcctggcaggccggtctggaccagtgtgaccccggctggctcgctgacggc
agcgcccgctaccccatcaacgtcccgcggaagaactgcggcggagacgagcccggcgtt
cggaccgtctacaacaagcccgaccgcactggcttccccgacaccgcagctctgtacgac
gcctactgctaccgagcccaccacacagagggggtccaggctgtggaggcgcaggctttg
taccagggacccgacccagcagcagagcccatttctccagtcactgaagcccagcgtagt
gcctctttatccaaaacctccacctggactggcctggttgacttggacaccgcaggagtc
agctccattgctgggaacaacgactcctctgagatctctgaagagcacgttgtcatccat
ttaagaccggaggaggtttgggatgaaaaacaggcgagccaggaagagtctgaaggccca
aagagtagcagcgccatgagccttccagaccaggagaaccatggggggtctgctcatgaa
gaagaagatggtggctattatggttcatctgacaccccgacgtcatcctccatagcttct
tccactccccagtcacagactagtaacagtgtgttggctgagtttatgaacactctggta
aagccctttaggtatttgacagcaggtaaagaggtggaggaaaagagactttcagtgctt
aaagtaaaagaaggggagaaccagacacagggggaagcatccagtagcaacctgagtata
ccgagaccaagtggaaacaagggcagcatggacaatgctattctggagcacaggagttta
tcctccaggactcccaccagtggactacaggctccagaggaaggtctgtctgagcaggag
aaagaggtgatgccactggttcgattagtgcctgcaatccaaaacgatgacaccactacc
cagcccggagaaaaagcctccagcacgtcttctaacagccctccatccagcagcagtaac
ggattcactgccacaggtcccaacgagagatcgccacccactgaacatgtcatggtatcc
gggcctcagggtcccagaggtggccctgctttctcttcagaccccagcaaccactttcgg
tgggccatcaaatccatgcgtgcctctaaactaggtcctcctggaaaggcgccgtttttg
ggtaaacgcccctcctgggagcctatggaagcaaaaagtgggccagtcgaggtgatgacc
ctgcccacctcccttcgacgggacatccctgaaaactattctggtcaggggaaggaccag
gatggagaagatgttaacgctgccagagtggcatcaggggaggacaaggagatggagggg
agcggtgaggggagcaactttcctgatgggtttggattgaaagccaacacgacttcactc
aaccagactgaggctgcgactgtggcagaacacactactctctcccactggcagctggtg
ccacagcccaccaccacaccttcagacacagcagaggccaggggagagatcctctacgtc
cacaggcccaccgaccacctctcctctgctccttcacgaagaggggaaagcagttcaaat
ccaggtttcactcctttgtctacaaagaacagcgaagaaaccagcggaaaggaagtggtg
acatctacacctgaagctcgtatggaggtgctgacaacctctgaagtgaccacagtggag
cttctgacaaccagagacacgcagaggacggatcctaccaccacagcaaccaccacagaa
aactcctcagagagcgccaccacagaggagccgtctatttccatctcatgggttcaggaa
gaccgggagaaaacaacacccaacctctcagcgactcccgcaaccggcgacgaatctcaa
acgactacgggcgttgttcagttgaccacttttgcatctgactctaacgttggcgccaca
caaatggaatccaggtctgccgtgtctgagtccttcgtggttggaagtcggtggacacct
ttcaaaaacccaaagtcagaggaccataaaactacgaaagacaacaaagacacaaacaac
cctttcggcatgctcatacccaactgggccttcggactcgtcccatcagtggagaataac
ccatgccagaccaacccgtgtctccatggagggagctgcctgcaggaaggggatggctat
agctgctactgtcctcagggcttctctggagagagctgcgagatcgacattgatgactgc
cagtctaacccatgccagaatggaggaacctgcatcgatgagatcaactcctttgtgtgt
ctttgtctgcccagctacggaggagcgacttgtgagaaagacactgagggctgcgagcac
acatggaggaagttccacggccactgctacagatacttcagccggagacacacctgggag
gacgctgagaaggactgcagggagcacagcggacacctggccagtgtccacagcctggcc
gagcagaacttcatcagagctgagggagggtccctgctgatgtgtagctccaggactgtg
tgtttggagcctgttgcacaaagaatagccctgcagcacaatatgcgaaaatctaccacc
caccgtctcctcatccctaagcccagaggagccaatgcagctggggagaatgaggctttc
accgaacatgaacgccgcttcctccagaggctctgcatatactgtggccaggctggccac
attcgagccaactgttccactcggccaaaagagcaggctcagcagccaggggaggggcgc
tggtga
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