Notothenia coriiceps (black rockcod): 104966612
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Entry
104966612 CDS
T04920
Symbol
bdp1
Name
(RefSeq) transcription factor TFIIIB component B'' homolog isoform X1
KO
K15198
transcription factor TFIIIB component B''
Organism
ncc
Notothenia coriiceps (black rockcod)
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ncc03021
]
104966612 (bdp1)
Transcription machinery [BR:
ncc03021
]
Eukaryotic type
RNA polymerase III system
Basal transcription factors
TFIIIB
104966612 (bdp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Myb_DNA-bind_7
Myb_DNA-binding
Motif
Other DBs
NCBI-GeneID:
104966612
NCBI-ProteinID:
XP_010794104
UniProt:
A0A6I9Q0N2
LinkDB
All DBs
Position
Unknown
AA seq
2196 aa
AA seq
DB search
MFRRSRFSIRPNVGATGKTASTPQESPSANQETSETPKDVGESSTASAVTDNKPPVNPSE
TPTVPGDGIDQHVEGTSSSAALQRRKRFSFKPKVAPGRPSIAARKTRTPVKAASETPISD
HYKPNTSSQTGTASAPQRLQSPRRRRPSEESKQQIIQPKPTTILSEPSVVPTTEDSTENK
SLLANTGKEFENISASQGNEASFSLPDKVPLSLPDKEAIAISEKARTLMSSKSRLSLSTP
AFSLSRLLNDPSDLQRLAKAQKLRDLLREEMHKEKVNSDYSKTKRSKKREKEFDLDPAKM
TMRDLIRYLPQSNPMTSSLEESVVENETVVPPSPGGQNVPEKVQEPEFVPKLPSQCEEEA
EAEAEAEAEAVADEEEEEEEEEEDDDAVMVPQVKVAEDGTLIIDEESLTVEVQRAKGPNP
ANERDPIFERGSTTTYSSFRKGTYCKPWSSEETDMFFLAISMVGTDFSMICQLFPLRARS
EIKNKFKKEERENSWRIDKAFRERRKLDIEYFSKLLEKILEVHKNRKKLKAMAEKKPPKE
SKKREKGRKKAGKKLSVVGGENEEEQKENPDLEKEGEKENEDLCNEAGTTAVESKKKRKI
KNTSTEEPKDKKNKTDKKSNEQDEAFIPGDKEAALPEDCQKSDMSEKTEGAKDGTIKPAK
LSRGRAPKPLLPLGRKRGKKPPPPSTTNDDASDKGEESLIDGASTEQVKKDASPSRQDQN
SKSANNGHSSEEEEATVQPPKPTRYGRVPKPTKPLNYSAKEAASETSPASPDASTASAAR
PKPKSTAKRGRSSKQQSSQESKKPKLVTLRASQSEYSDEEDEKQREEEELEEEQHVACSP
SRDSSAPVFVPAILRSPHPVISEVEETMEELDILATMPDVLGISQNALCPDDSWEWAQKE
TGTAEPCEHQLDLLVDVIDFLSIDHAEVSEDESYNEAAQTLLTIGNLAHLSQSAQNQIAI
EDQLTGTTSDSLNETREQLEEEVATKIDAVKENRATPVVSATSVNEVTETSETVTTVELQ
NIIDNNDVPILESSDQRTGSDMDPISQLTSKTDSPPTRRARLSKVKPKPNLGQASRTAQS
KSQPATSTVRAAEESPSDAPDLSQAPCPSPALDMKPSVDLASTPILTEELSGVSGAKTSQ
RRASENKDISEAQFEIRREPDRRDTRPTYGSTDEDKMSHVGTSEMSCNNPLTSDTVVAEM
QIGQGSKSNYPASCVKPLEELPAREKEESEVKSATQTRKSRFQKVNPNLTQTSRSIHSKA
QTSKDTIEKDSYSTPVTKFHEKIIAEPTFTTSTEKQIQSDVPELTDEVLMSDVKSESRCN
NPLKSNAAATDLQLGQGSIKGSVQESKDHPATCVTPVEKLPVGEKEGSEVKSTSRARKSR
FQKIKPNLNLAQTSRTVRSKGQTSKDNIEKDSDLTPTTRFHEKTIAEVEAEPTCTTSPSE
KPSHSPGPSSDCIPSLDFGITLKPTEELFTTVEKETDLEVVSGSTTTQQSASETMNLSEA
QFEPSRGQETRDTKPASESTEESASSVTPVIELPVSQKEASEVKSSCKTIRICLHQVKRR
SNLSQMSRTAQSKPQVTKDPFLPMPQAETCSSPTSRPNLPDKTTAEVEAQPSCSTIPSEQ
PSHSTASVSVQSLELDSTPKTIEQNKNVACELESSSEGSEQSVSQRRQRFPKVKPKPNLG
SSLRTTRSKLQSNDICKPAEQCHMKTSLTTEQQPSDNDDAGPGLQSECKQDMFFKATKTI
TQPTDGPTTVSDVQSSGDGSTESQIVSMQSTNTHSTPDPKESTQEPPTENDPEAPSQDAV
QQSSETNETSVKSPDEKQPEPTDSPSGKAPPTRRGRLIKPKPTLGRSRRPPQHVKNTQQA
EAADVGILSEGGDDSVCPKLVAEVVPDILKPVEGAIDQSSNTIPSPKYADTSLGSSTKVI
EQLSQHEPLVEVSGLSTGCTTQVPDSGTQDASTSSAGGTQGHPSFTIFPDMMLPQDPSDP
DEPFFILSLTEIPVSSSGEGVDSVPEPLPSLPVTDAPIEQQSVPGESLATAEEQSPPNVT
VPVPMEDSNETGVIHVKDPDDGSIEGNQVDPHERTTVHPSTVQETGQNKDETEIPPTKER
QTGTRRRETAKPQVKPKTTKRKQTSKTAAAKKAESLPIQTDTTEQLELPGPSVQPEASDD
TEPQRGRADHVEVEKETLTDVVDPEGTGSGDKNYTD
NT seq
6591 nt
NT seq
+upstream
nt +downstream
nt
atgttccgtcggtcaagatttagtatccggcccaatgttggtgctacaggaaaaacagca
tcaacacctcaggaatccccttcagccaatcaggagaccagtgagacccctaaggacgtt
ggtgagagctccactgcttctgctgttacagataacaagcctcctgtgaacccatcagaa
acacctacagtcccaggggatggtattgaccaacatgtggaaggtaccagctcctcagca
gccctccagagaaggaagcggttttccttcaagcctaaagtggccccaggccgcccctcc
attgctgctcggaaaacaagaacccctgtcaaggcagcctctgaaacccctatttcagac
cattacaagccaaatacgtccagccaaactgggactgcatcagcccctcagagactgcag
tccccaaggcgacggagaccttcagaagagagcaagcagcaaataattcaacccaaacca
accaccatcctttcagagccttcagttgtacctacaactgaggactctacagaaaataaa
tcgttgctggcgaacactggcaaagaatttgaaaacatttcagccagtcaaggaaatgaa
gcttctttcagtctcccggataaagtgcctctctctctaccagacaaagaagctattgca
atatcagagaaagccaggactctaatgtcatctaagagtaggctgtcactgtcaacacca
gcgttctccctgagtcgcctcctgaatgacccttcagacttacagaggcttgcaaaggcc
caaaaactcagagacctgctcagagaggagatgcacaaagaaaaggtaaactcagattat
tcaaaaaccaagagatctaagaaaagggaaaaggaatttgatttagatcctgccaaaatg
accatgagggacctcatccgttatctaccacagtctaaccccatgacatctagtttggaa
gagtccgttgtagagaatgagactgtggtcccaccttctccaggaggacaaaatgtccca
gagaaagtgcaggaacccgagttcgtcccaaaactgccaagccagtgtgaggaggaagca
gaggcagaggcagaagcagaggcagaggcagtggcggatgaggaggaggaagaggaggag
gaggaggaggatgatgatgctgtgatggttcctcaggtcaaagttgcagaggacggcaca
ctgatcattgatgaagagagcttgaccgtggaagtccagcgagccaaagggccaaatcca
gcaaatgagcgagaccccatctttgagcgtggctccactacaacttactcaagcttcagg
aaagggacctactgcaaaccctggtccagcgaagagacagacatgttctttctggcaatt
agtatggtgggaacagacttttccatgatttgccaactgtttcctctgagagcacgatca
gagataaagaacaaatttaaaaaagaagagcgagagaattcctggaggattgacaaagct
ttcagagaaaggcgcaaactggacattgagtatttttctaaactgttagaaaagatactg
gaagttcacaaaaacaggaagaaactgaaggcaatggctgagaagaaacctccaaaggag
agcaagaaaagagaaaagggccgaaagaaagctgggaagaagctgagtgttgtggggggg
gaaaatgaggaagagcagaaggaaaatcctgatttggagaaagagggagagaaggagaat
gaggacctctgtaatgaggcgggaaccactgctgttgagtctaagaaaaaacgcaaaata
aagaatacctcaactgaggaaccaaaggacaagaaaaacaaaacggataaaaagagcaat
gaacaagatgaggcctttatacctggagacaaagaggcagcacttcctgaggactgtcaa
aaatcagacatgtctgaaaagactgagggagccaaggatggcacgatcaagccagccaaa
ctttcacgaggtagagcaccaaaaccactgctgccgttgggccgaaagaggggtaaaaag
cccccacctccctccacgaccaacgatgatgcatcagataaaggagaggagagtctgatt
gatggagcatccacagagcaggtaaaaaaagatgcatcaccttcaaggcaagaccaaaat
agtaagtcagccaataatggtcattcatctgaagaggaggaagcaaccgttcaacctcca
aaacctaccaggtatggaagagtgcctaaacccaccaagcccttgaattactctgccaag
gaggctgcatctgaaaccagtcctgcctcgccagatgcgtccactgcttctgctgccagg
cctaaacccaaatccacagccaagaggggaagatcatcaaagcagcaatcatcccaagag
tccaaaaagcctaaattagtcaccctaagggcttctcagtcagaatacagtgatgaggag
gatgaaaagcagcgagaggaagaagagttggaggaggagcagcacgttgcatgcagtcca
agtagggacagctctgcccccgtatttgtgccggccattctgcgctccccacatcctgtc
atttcagaagtggaagagacaatggaggaacttgatatcttggccactatgcctgatgtg
ttgggcatctcccaaaatgcactctgccctgatgactcttgggagtgggcacaaaaagaa
acaggcacagctgaaccctgcgaacatcagctggacctgctcgttgatgttattgacttc
ctttctatagaccatgcagaagtatctgaggacgagagctacaatgaggctgctcaaacc
ctgttgacaattgggaacctggctcacctctcacagtcagcacagaatcaaatagccata
gaagatcaattaacagggacaacatcagacagtttgaatgaaaccagagaacagctagaa
gaagaggttgccacaaagattgatgcagtaaaggaaaaccgtgccactcctgttgtgtct
gcaacttctgttaatgaagtcacagaaacgtccgaaactgttaccacagtggagctacaa
aacattattgacaataatgacgtccccattcttgaatccagtgatcagaggacaggttct
gatatggatccaatctctcaattaacctcaaagacagattctccaccgaccaggagagca
cgattatccaaggtgaaaccaaaacctaacctaggccaagcttcaaggactgctcagtca
aaatcacaaccggcaacatcaacagtaagggcagctgaagaaagcccatcggatgctcct
gacctttctcaagccccttgtcctagtcctgctttggatatgaaaccgtcagtagattta
gcctctactcctattctgacagaagaactctcaggtgtatcaggtgcaaaaacatcacag
cgacgtgcgtcagaaaacaaggacatctctgaagcccagtttgaaatcagaagggaacca
gacaggagagacacaaggccaacatatgggtcaacagatgaagataagatgtctcatgtt
gggacatctgagatgagttgtaataatccactgacatctgacacagttgtcgctgaaatg
cagattggacaaggatcaaaaagcaactatcctgcttcatgtgttaaacctttagaagag
ttacctgccagagagaaagaagagagtgaagtcaaatctgcaactcaaacaaggaaaagt
cgattccagaaagtcaatcccaacctaacacagacatcaaggtccatacattctaaagct
caaacctcaaaagacaccatagagaaagactcatactcaactccagttaccaaattccat
gaaaaaataatagcagagccaactttcaccacctcaactgaaaaacaaattcaaagtgat
gttccagagttgacagatgaagttctgatgtcagatgtgaaatctgagagtagatgtaat
aatccactgaaatctaacgcagcagccacagacttgcagcttggacaagggtccatcaaa
ggctctgtccaagagagcaaagaccatcctgctacatgtgtgacacctgttgaaaagtta
cctgtcggtgagaaagaagggagtgaagtcaaatctacaagtcgggcaaggaaaagtcga
ttccagaaaatcaaacccaatctcaacctagcacagacatcaaggactgtacgttctaaa
ggccaaacttcaaaagacaacatagagaaagactcggacttgactccaactaccagattc
catgaaaaaacaatagcagaggttgaagcggagccaacttgcaccacctctccttctgaa
aaaccaagtcacagtcctggcccttcttcagattgtataccttcattggatttcgggata
actcttaaacctacagaggaactgtttacaactgtggagaaagagacagaccttgaagtt
gtatcaggctcaacaacaacacaacagagtgcctcagaaaccatgaacctctctgaggcc
cagtttgaacccagtaggggacaggaaaccagagacacaaagcctgcatctgagtcaact
gaagaatctgcttcatctgttacaccagtaatagagttacctgtcagtcagaaagaagcg
agtgaagtcaaatcttcttgtaagactattagaatatgtttacatcaagtcaaacgcaga
tccaacttatcacagatgtcgagaactgcgcagtcaaagcctcaagtcactaaagaccca
ttcctacccatgcctcaggcagagacatgctccagcccaacttcaagacctaatttacct
gacaagacaacagcagaggtagaggcacagccatcttgcagtaccatcccttctgaacaa
cctagccatagcactgcgtcagtatcagtacaatcattggaattagactccactcctaaa
accatagaacaaaacaaaaatgttgcatgtgagctagagtcaagctcagagggctctgaa
caaagtgtttcacaaagaaggcaacgctttccaaaggtcaaacccaaacccaatttggga
tcatctcttagaactacacgctcaaaactgcagtcaaatgatatctgtaaaccagcagag
cagtgtcatatgaaaacctctttaaccacagaacaacagccttctgataatgatgacgca
ggacctggtttgcaaagtgagtgcaaacaggacatgttctttaaagctacaaagacaatt
acacaaccaacggatggcccaacaacagtttccgatgtccagtcttcaggagatggttca
acagagtcccaaattgtctccatgcaatctactaatacacactccacaccagatccaaaa
gaaagcactcaggagccacctacagaaaatgaccccgaggcaccaagtcaagatgcagtt
caacaatcttctgaaaccaatgaaacaagtgtcaaaagccctgatgagaaacagccagag
ccaacagactctccctctggaaaagctcccccgactcgtagaggccgacttattaaaccc
aaacccaccctgggacgcagcaggcggcctccacaacatgtcaagaatacacaacaagca
gaagcagcagatgttggtattctctcagaaggtggggatgattcagtttgccccaaactt
gtggctgaagtcgtacctgacatcctgaaaccagtagagggcgccattgatcaaagtagt
aacacaattccctctccaaaatatgctgatacttcactgggaagctcaacaaaagtaatt
gaacaactgagtcaacatgaaccccttgtagaggtttctggattgtctactggttgcacg
acacaagtacctgactcaggtactcaggatgcatcaacatcaagtgcaggtgggacccaa
ggtcatcccagcttcacaatatttccagacatgatgttgcctcaggatccttctgatcca
gatgaaccgttcttcatcctctctctgaccgagatcccagtcagctcatctggggagggg
gtggacagtgtgcctgagcccctcccttctcttcctgtaacagatgctccaatagagcaa
cagagtgttcctggagagagtttggcaacagcagaagagcagtctccacctaatgtcact
gtgcctgtgcccatggaggacagtaatgagacaggcgtcatacatgtgaaagacccagat
gatggttcaattgaggggaatcaagtggacccacatgagagaactacagttcatccgtct
acagtgcaagagactggacagaataaagatgagactgaaattcctccgacaaaggaaaga
caaacaggcactagaagaagagaaacggccaaaccgcaggtgaagcccaaaacgacaaag
aggaaacaaaccagcaagactgccgctgctaagaaagctgagtccctccccatccaaaca
gacaccacggagcagttagagcttcctgggccttctgtgcagccagaggcttctgacgac
actgagccacagagaggaagggctgatcatgtagaagtggaaaaggagactctgacagat
gttgtggaccctgagggcaccggctcaggagacaaaaactacacggactag
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integrated database retrieval system