Notothenia coriiceps (black rockcod): 104966874
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Entry
104966874 CDS
T04920
Symbol
tnc
Name
(RefSeq) tenascin isoform X1
KO
K06252
tenascin
Organism
ncc
Notothenia coriiceps (black rockcod)
Pathway
ncc04510
Focal adhesion
ncc04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ncc00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
104966874 (tnc)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
104966874 (tnc)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ncc00536
]
104966874 (tnc)
Glycosaminoglycan binding proteins [BR:
ncc00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
104966874 (tnc)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_Tenascin
EGF_2
Pur_ac_phosph_N
NDNF
hEGF
EGF
DUF4998
NDNF_C
PmbA_TldD_1st
Motif
Other DBs
NCBI-GeneID:
104966874
NCBI-ProteinID:
XP_010794492
UniProt:
A0A6I9Q0U3
LinkDB
All DBs
Position
Unknown
AA seq
2367 aa
AA seq
DB search
MGARGLLGCLLLTALLSLSNAGLVKKILRHRRQTLESPKKGHNITLPSADRPVVFNHVYN
INVPASALCTVDVDAPESTDLHPTNATVVSGLPGTEHTVNGENQIVFTHRINIPRRACGC
TDGMPGLKELLSRLEMLEGEVSTLRDQCGSSQVTGKLGTKPYCNGHGNYSTEICGCICEP
GWKPPNCSEPECPNDCHDRGLCVGGKCVCFKGFTGKDCALDDCPVDCGTYGQCVGGECIC
SYGYYGEDCSQTKCLNNCQDRGRCEDGDCVCDEPWTGPDCSELICPKDCYDRGRCVNGTC
YCDEGFTGEDCGEHTCPNNCLSNGYCVDGKCVCAAGFNGEDCSRVICLNDCNDRGTCFNG
MCICDAGYQGADCSQLACLNNCNNRGQCINGQCDCDVGFQGDDCSELSCPNDCRHRGRCV
NGQCVCEEGFAGEDCSIRTCPSNCYGRGECIKGRCVCHSGFTGEDCAELSCPNNCQNRGR
CIDGQCVCDEGFSGEACGQKACPNDCLARGNCVDGKCICPEGYSGDDCSVHTCPGDCNNR
GRCINGKCTCEAGYEGESCADLSCPNNCQDKGRCENGQCVCDEGYIGEDCSEVSPPKDLT
VGEVTPDTVDLNWENEMLVTEYLVTYVPTRPGGLQQEFIVPGDKTVATVKELEPGIEYLI
SVYAVLSNKKSIPVSARVATVLPKPEGLIFKSVRESSVEVMWDQVDISFDGWEIYFRNTK
EENGKIVSTLPPDQNQFIQSGLGPGQEYEVSVNIIKNNTRGPQTTEKVMTKIDGPRQVEV
KDVTDSSALVSWSLPVAPMDRLTLAYSPSSEPSQEAIVGVSIPETQYSIDSLKPDTEYTV
SLISRSRDVSSDPVIATFTTALDAPKDLKAVSQTEESITLQWTNSQADVGNYLVKYTPLS
GATHGEELFPRGPGDTTKATITGLKPGTEYGIGVTAVKNDRESFPATTNAATDIDPPRDF
KGMESTETSLTLSWQKPQAKVGAYSLVYVSRDGQVEEVEIPPTETSHVLYNLIPGMSYTV
TLAAERGLKRSTPVTLSATTATFTFYLADSDDRDLTTPSGSEDNVISFVHLDPSESQFSV
ETEPEDEHGKLTISGITPDGFDLSWELKTHSVYDSLAVEYKDTQRLWDVREVQLPGDATG
FRIEGLNASKEYQIKLYGNINSQRSSLLEAVAVTAPKPTSPDVLMMSVKDAPTTALDTEA
VRNPDPLRPLNTSDTEVMSSGAEPESSILEVLGDLTVNVSSTGLSLAWSAPDEAFESFLV
ELRAPSGPTEAHVTTTLPGSVRKAEIEGLSPSTKYNITVQGLVEGKRSLPLTVFATTAEE
LKPMVGNLTISDITWDGFTASWSPLGGEFESFVIEVTNLDNFEESQNLSLSGDAFSLGLS
RLNPNTSYMVGLFGMYQGSFLEPVYTEATTVHLPVLGELYISNLTSESFTISWNGTDGKF
DGYILEIIDSDWLTEPKEYNISHNAKSHDVKGLRPTTDYVAYFYGTYKGSRTSAVSIVAS
TAEEPDLSRLVVSNITSDRFSLSWRTGEKAFDNFIVEVRESALPSQAMGRALPGDVHSTV
MAGLKASTSYDIKLYASAGDQNTQPLFEVATTEDVPLLGPLAASSVSPHNLSLSWSTVSG
HFDGFVIRVSDPEQQSDTLEFRLPGEACNLTVSNLMDATGYDIELYGISHGRQTATVLTH
AVTAPLPRVENLSISRITPYGFRVSWEVKQQEALSPSSGGFRHFQIVVTDSGWLLEPQEF
TVPGNQSHLDIWGLITGIGYEVRLTGVSESGLLSRPLTTVAVTEAEPEVEHLFVSDTTAD
GFRLSWTSDEDLFDRFVIKIRDSKRLAHPHEYSVRGDERTKVLTGLMSGTEYEIELSGVT
LDRRSQPIFGVAQTGLSTPNGLSFSEVMDSSAVVHWSMPRFPVDNYRITYVPFEGGSPLM
VTVDGDVFEALLPNMSPGRKYQVTVSAMKGLEESDPNTDTVITALDRPQGLTAANVTDTS
ALLLWQPSVASVDGYIITYSADSVSPVVEHVSGNTVEFEMGSLVPATHYTVGVHAMRDAQ
KSDPADTEFTTDVDPPRDLRAINVQTDGATLTWKPPQAAVTGYILTFDSADGVIREVVLS
PTASSYNMAQLTDSTEYNVKLQAIAGPQRSRYVTTVFTTIGQLYRHAKDCAEILLNGETT
SGLYTISVGGEESQPIQVYCDMTTDGGGWMVFLRRQNGKLEFFRNWKNYTAGFGNMSDEF
WLGLSNLHKITNSGHYDLRVDMRDEGESVYAQYDKFTIAEPRTRYKVYMGAYSGTAGDSM
TYHQGRPFSTYDNDNDIAVTNCALSYKGAFWYKNCHRVNLMGKYGDLSHSKGINWFHWKG
HEHSIEFAEMKIRPANFRNVENRKKRS
NT seq
7104 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcacgaggccttctgggctgcctcctcctgactgctttgctcagcttatcaaat
gccgggctcgtgaagaaaatcctccggcatcgacgacagactctggaatcccctaaaaaa
ggacataacatcacgctccccagtgcggaccgccctgtagttttcaaccacgtctataac
atcaatgttcctgccagtgccctgtgcacggtggatgtcgacgctccagagagtacggac
ctccaccctacaaatgcaacagtcgtttcaggccttcccgggactgagcacacagtcaat
ggggagaaccagatcgtcttcacccaccgtatcaacataccacgacgggcctgtggctgt
actgacggcatgcccggcctgaaagagctcctaagccgactggaaatgctcgagggagaa
gtttcaacacttagagatcagtgcggcagttcacaggtcacaggtaagttgggaactaaa
ccctactgcaatggtcatgggaactacagcactgaaatctgtggctgtatatgtgagccg
ggctggaaaccacccaactgctctgaacccgagtgtcctaatgactgccatgaccggggc
ctctgcgttggcggaaagtgtgtgtgcttcaagggattcaccggaaaggactgcgcactc
gacgactgccctgtggactgcggtacatacggccagtgtgtgggaggtgaatgcatctgc
tcctatggttactacggcgaagactgctctcaaaccaagtgcctcaacaactgccaagac
cgcggccgctgtgaagacggagactgcgtttgtgatgaaccctggactggccctgactgc
tctgaactcatctgccccaaagactgctatgaccgtggacgctgcgtgaatggcacctgc
tactgtgatgaggggttcaccggggaggactgtggagagcacacctgtcctaacaactgc
ctcagtaatggttactgtgtagatggcaaatgcgtgtgcgctgccggcttcaatggagag
gactgctctcgagttatttgcctcaacgactgtaatgacagaggtacgtgcttcaacggg
atgtgtatctgtgacgcgggctatcaaggcgcagactgcagccagttagcatgcctcaac
aactgtaacaacagaggccagtgcataaacgggcaatgtgactgcgatgttggtttccag
ggagatgattgctctgagctttcctgtccaaatgactgccggcacagggggcgctgtgtg
aacggccagtgtgtgtgcgaggagggctttgctggtgaggactgcagcatcaggacctgc
ccctcaaactgctacggccgcggtgagtgtatcaagggacgttgtgtgtgtcattcaggc
ttcaccggtgaggactgtgctgagcttagctgccctaacaattgccagaaccgcggccga
tgcatcgatgggcagtgtgtttgtgatgaaggcttcagtggggaggcctgcggtcagaaa
gcttgtcccaacgactgcctggcccggggtaactgcgtcgacggcaagtgcatctgtccg
gaaggctactcaggagacgactgctctgtgcacacctgcccaggtgactgcaacaacagg
ggacgctgtatcaatggaaagtgcacgtgtgaggctggatatgaaggggaaagctgtgca
gaccttagctgccccaacaactgccaggacaaaggccgctgtgagaacggacagtgcgta
tgcgatgagggatacatcggagaagactgctcagaagtgtctcctccgaaggaccttact
gtaggcgaggtcacccctgacacggtggacctgaactgggaaaacgagatgctggtaaca
gagtaccttgtgacatatgtgcccaccagacctggtggtcttcaacaagagttcattgtg
ccaggagacaaaactgttgccaccgtcaaagagcttgagcctggcatcgagtatctgatc
agtgtctacgctgttctaagcaacaagaagagcatccccgtcagtgcgcgggtggcaaca
gtgcttccaaagccagagggtttaatcttcaaatcagtgagagagagctctgtggaggtg
atgtgggaccaggtggatatctcctttgatggctgggagatctatttccgcaatacgaaa
gaagaaaatggaaaaatcgtgagcacccttccacctgatcaaaaccagtttatccagtca
ggacttgggccaggacaggagtatgaagtctctgttaacatcatcaagaacaacacaaga
ggaccccaaacaaccgaaaaagtcatgaccaagattgacggcccccggcaggtggaggtg
aaggacgtgacggactcctctgctctggtcagctggtctctgccggtggctccgatggac
agactcaccttggcctacagtcctagctctgagccttcacaagaagccatagtgggggtt
tccatcccggagactcagtacagcattgacagcctgaagccagacaccgagtacaccgtg
tcgctcatctccaggagcagagacgtctccagtgaccctgtcatcgccacgttcactaca
gccctggatgcacccaaggacctgaaggccgtgtcacagacagaagagagcatcaccctg
cagtggaccaacagtcaagctgatgttggcaactatctggtgaaatacactcccctctct
ggagccactcatggggaggaactgtttcctcgagggccaggagacaccacaaaagctacc
atcactgggctgaagccagggacggagtacgggattggtgtgacggcggtgaagaatgac
agagagagcttccctgctactacaaatgcagcaactgatatcgatcctcccagagatttc
aaaggaatggagtcaacagagacctccctcacgctgagctggcagaaaccccaggccaag
gtcggtgcctacagtctggtgtacgtctccagggatggacaggtggaggaggtggagatc
ccgcccactgagaccagccatgtcttgtacaacctgattcctggaatgagctacaccgtc
actttagctgctgagagggggctcaagaggagcacaccggtcacattatctgcaaccaca
gccactttcacattttatttagcagactcagacgaccgtgatctaacgactccatcaggc
tcggaggacaatgtcattagctttgtgcatttagatccctcagagtcccagttttcagtt
gagacggagcccgaggatgagcatgggaagttgactatctcgggcatcacgcctgacgga
tttgacctctcttgggaactgaagactcatagtgtctatgatagtttggccgtagaatat
aaagacactcagcggttatgggatgtgagagaagtccaacttcccggagatgccactggc
tttagaatcgagggactgaatgcatcgaaagaatatcaaataaaactttatggaaatatc
aatagccaaagatcttcgctacttgaagctgttgcagtcacagcacccaaacctacctct
ccagatgttcttatgatgagcgtcaaagatgctccaacaactgctctggatactgaagca
gttcgaaacccagatcccctccgtcccctaaacacttctgatactgaagtgatgagttct
ggggctgagcctgagagctccatcctggaagtattgggagacctcacagtcaatgtgtct
tccaccggcttaagcctggcgtggtcggcgcctgacgaggcttttgaaagctttttggtg
gagctcagagctccatcagggccaacagaggctcatgtaaccaccacactaccaggaagt
gtgagaaaggctgaaatagagggattgtccccctccacaaaatataatattacagttcaa
gggctggtggaagggaagcggtctttacctctcacagtttttgctaccacagcagaggag
ctgaagcccatggtggggaacctcaccatctctgacattacatgggacggcttcactgcg
tcctggagccccttgggcggggaatttgaaagctttgtcattgaggtaacaaacttggac
aatttcgaagagagccagaacctcagtctgtccggagatgctttcagcctgggcctctcc
agactcaaccccaacaccagctacatggttggcctgtttgggatgtatcagggctccttc
ctggaacccgtgtacactgaagccaccacagtgcatctaccagtgcttggagaactttat
atctctaacttaacgtcagagagctttacaatctcctggaacggcactgatggcaaattt
gatggttatatcctggagataattgattctgattggctaacggagccaaaggaatataac
atttcccacaatgcaaagtcccatgacgtcaaagggctcaggcccaccactgactatgta
gcctacttctatgggacatacaagggatcccgaacaagtgctgtcagtattgttgcatca
acagctgaagagcctgatttgtccaggctagttgtttcaaacattacctcagacagattt
tctctgtcgtggcggacaggagagaaggcttttgataactttatagtagaagtcagagag
tctgctttgccctcgcaggcaatggggcgcgctctgcccggagacgtgcactccacagtc
atggccgggctcaaagccagtacaagctacgacataaagctgtacgccagcgctggtgac
caaaacacacagcccctgtttgaagtagctacaacagaggacgtaccactgttggggccc
ctagctgcttcatccgtgagcccacataacctcagcctgtcctggagcactgtgtcaggt
cactttgatggctttgttatccgggtcagtgaccctgagcaacagtctgatacactggag
ttcagactgcctggtgaagcctgtaacttaacggtctctaacctgatggatgccacgggc
tatgatattgaactgtacggtatctctcatgggcgccaaactgccactgtattaacccac
gccgtcacagcgcctttgcctagagtggaaaacttgagcatttccagaatcaccccctac
ggcttccgtgtatcgtgggaggtgaagcagcaggaggctttatccccctctagtggcggc
ttcaggcattttcaaatagtggtgacagactccggctggctgctggagcctcaggagttc
actgtgccgggaaaccaaagtcacctggacatctggggcctcatcaccggcataggctat
gaggtcaggctgaccggggtgtcagagtcagggctcctctctcggcctctcactacagtg
gctgtgacagaggctgagccggaggtggagcatctttttgtgtcggacaccacggctgac
ggttttcgtctgtcatggacgtctgatgaagacttgtttgacagatttgtgatcaaaata
agagacagtaaaagactagcccaccctcacgagtacagtgtccgcggtgatgaaaggacc
aaggttttaactggactcatgagtggcaccgagtatgaaatagagctttccggtgtcaca
ttggatcgacgctcacaacctattttcggggttgctcagacaggcctcagtactccaaat
ggactgagcttttctgaagtgatggactcctcagctgtggtccactggtccatgcctcgc
tttccagtggataactacagaatcacctacgtgccctttgaaggaggaagccctctgatg
gtgactgtggatggcgacgtgttcgaggctctgctgcccaatatgagccctggcagaaag
taccaggtgactgtgagtgctatgaagggcctggaggaaagtgaccccaacactgacact
gtaatcacagctctggacagacctcagggcctgactgcagctaatgtcactgacacgtcc
gccctgctgctatggcaaccgtctgtcgccagtgtggatggctacatcattacttacagt
gctgactcggtgtcccccgtggtggagcatgtttctgggaacacggtggagtttgagatg
ggctctctggttcctgcaacccactacacagttggagttcacgctatgagagacgctcag
aagagtgaccctgctgacactgaattcaccaccgatgtggatcctcctcgtgatctgagg
gctattaacgtccaaactgacggtgcgactctcacatggaaacctccgcaggcggcagtg
actggttacattctcacctttgactctgctgatggagtaatcagggaagtggtgctaagc
ccgacagcgtcctcttataacatggctcagctcaccgactccacagagtacaatgtgaaa
cttcaggccatcgctggaccccagaggagtcgttatgtgaccaccgtcttcactaccatt
ggacagttgtacagacacgctaaagactgcgctgagattttactgaacggagagacgacc
tctgggctgtacaccatcagcgtgggaggagaggagagccagcccatccaggtctactgt
gacatgaccacagacggaggaggctggatggttttcctcagacggcagaatggaaagctg
gagttcttcaggaactggaagaactacactgctggctttggaaacatgagcgatgagttc
tggctgggtctttccaaccttcataaaatcacaaattctggccattatgatctgcgagtg
gacatgagggatgaaggagaatcggtctacgctcagtacgacaagttcacgattgcagaa
ccaagaacccgctacaaagtctacatgggagcgtacagtggaacagcaggggactccatg
acgtaccaccagggtcgacctttctccacctacgacaacgataacgatattgctgtcacc
aactgcgccttgtcctacaaaggagccttttggtataaaaactgtcatcgtgtcaacctc
atggggaaatatggggatctcagtcacagtaaggggatcaactggttccactggaagggc
cacgaacactcaattgaatttgcagagatgaagattaggccggctaacttcagaaatgtg
gagaacagaaaaaaacgatcatag
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integrated database retrieval system
