Candidatus Nitrosomarinus catalina: NMSP_0595
Help
Entry
NMSP_0595 CDS
T04846
Symbol
lig
Name
(GenBank) DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
nct
Candidatus Nitrosomarinus catalina
Pathway
nct03030
DNA replication
nct03410
Base excision repair
nct03420
Nucleotide excision repair
nct03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nct00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NMSP_0595 (lig)
03410 Base excision repair
NMSP_0595 (lig)
03420 Nucleotide excision repair
NMSP_0595 (lig)
03430 Mismatch repair
NMSP_0595 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nct03032
]
NMSP_0595 (lig)
03400 DNA repair and recombination proteins [BR:
nct03400
]
NMSP_0595 (lig)
Enzymes [BR:
nct01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NMSP_0595 (lig)
6.5.1.6 DNA ligase (ATP or NAD+)
NMSP_0595 (lig)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
NMSP_0595 (lig)
DNA replication proteins [BR:
nct03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
NMSP_0595 (lig)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
NMSP_0595 (lig)
DNA repair and recombination proteins [BR:
nct03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
NMSP_0595 (lig)
NER (nucleotide excision repair)
Other NER factors
NMSP_0595 (lig)
MMR (mismatch excision repair)
Other MMR factors
NMSP_0595 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ARS64216
UniProt:
A0A2Z2HN22
LinkDB
All DBs
Position
complement(492918..494684)
Genome browser
AA seq
588 aa
AA seq
DB search
MEYSILADSFEKMESTRKRLELTQMLVELFEKTPQEVISKIVYLIQGKLRPDFEGIELGV
AEKLAIRAVSKSSGIAIKKIEDEYTKGGDLGHAAAVILEQKTQTTFLVENITVERVYETL
FKIAKLEGSRSQDMKIKYISSLLNDANPLEASFILKILLGTLRLGIAENTVMDALAIAYS
GNKENRKLLQNAYNVSSDLGKVAETIALEGIQGIEKFKVNLFNPIRPMLADRVKSEKEVI
EKMGEEFAIEYKLDGERVQLHIEGDKIELFSRSLEKISSYYPDIIEKIPKMVKAEDAIME
AEIVAINENTGDFLPFQELMHRRRKYKIEKAVSEYPITVNFFDVLYCNGKDCTDLNYIER
RRKLENIVQENEFAKFIPMTLAKNENEIEEFFENSINAGSEGLMLKMLDKPYQAGSRGSH
WLKLKREYRNELGDSLDLVVVGGFFGKGRRTGSYGTLLLSTYDENTDTFPSICKVGTGFT
DESLDQLYQILSPKTTIKKNPRINSEMDADVWFEPELVIEIVASEITLSPIHKVARDEIR
KDTGLALRFPKFTGKIRVEKMAEDASTDDEVISLYKGQNKAAHDKNLI
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atggaatattctattttagctgattcttttgaaaaaatggagtcaacaagaaaaagatta
gagttaacacagatgctagtagaattatttgaaaaaacaccacaagaggtaatttcaaaa
atagtttatctcattcaaggaaaattaagaccagactttgaaggaattgaattaggagtt
gcagaaaaattagcaatccgagcagtttctaaatcatcaggtattgcaattaaaaaaatt
gaagatgaatatacaaaaggaggagatttagggcatgctgcagctgtaattttagagcaa
aaaacacaaacaacatttcttgttgaaaatatcacagttgaaagagtgtatgaaacatta
ttcaaaattgcaaaattggaaggatcaagatctcaagatatgaaaataaaatatatttca
agtttgttaaatgatgcaaatccattagaggcaagtttcattttgaagattttattgggc
actctaagattaggcatagcagaaaatacagtaatggatgcattagcaattgcatattct
ggaaataaagaaaatagaaaattattacaaaatgcatacaatgtttcaagtgatttagga
aaagtagcagagacaattgcattagaaggaattcaaggaattgaaaaattcaaagtgaat
ttatttaatccaattcgtccaatgcttgcagacagagtgaaaagtgaaaaagaagtaatt
gaaaaaatgggagaagagtttgcaatagaatacaaattagatggagaaagagttcaactt
cacatcgaaggagataaaatagaattattctcaagaagtttagaaaaaatttcaagttac
tacccagacataattgaaaaaattccaaagatggtaaaagcagaagatgcaattatggaa
gcagagattgtagcaattaatgaaaacacaggagattttttaccatttcaagagttaatg
catagaagaagaaaatataaaattgaaaaagcagtttcagaatatccaattacagtaaat
ttttttgatgtactctattgtaatggaaaagattgtacagatttgaattacattgaaaga
agaagaaaattagaaaacattgttcaagaaaatgaatttgcaaaatttattccaatgact
ttagcaaaaaatgaaaatgaaattgaagaattttttgaaaacagcattaatgcaggaagt
gaaggattgatgttgaagatgctagacaaaccatatcaagcaggttcaagaggaagtcac
tggttgaaattaaaaagagaatatagaaatgaattaggagatagtttagatcttgtagtg
gtaggaggattttttggaaaaggaagaagaacaggcagttatggaacactattgctttca
acatatgatgagaatacagatacatttccaagcatatgtaaagttggaacagggtttacg
gatgaaagtttagatcaattatatcaaattcttagtccaaaaaccaccatcaaaaaaaat
cctagaatcaatagtgagatggatgcagatgtatggtttgaaccagaattggttattgaa
attgtagcatcagaaattacattgagtccaattcacaaagttgcacgtgatgaaataaga
aaggatacaggactagcactgagatttccaaaatttacaggaaaaattagagttgagaag
atggcagaagatgcatcaacagatgacgaagtaatttcactctacaaagggcagaataaa
gctgcacatgataaaaatttaatctaa
DBGET
integrated database retrieval system