Nonomuraea coxensis: Nocox_15540
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Entry
Nocox_15540 CDS
T07466
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ncx
Nonomuraea coxensis
Pathway
ncx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ncx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Nocox_15540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ncx03400
]
Nocox_15540
Enzymes [BR:
ncx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Nocox_15540
DNA repair and recombination proteins [BR:
ncx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Nocox_15540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QYC40723
LinkDB
All DBs
Position
complement(3349200..3350204)
Genome browser
AA seq
334 aa
AA seq
DB search
MVRLPAYAPMLAQLGALTSVQGEDWAVEMKWDGVRALAYVEDGTVRLVSRNGRDITPAYP
ELQLMAGATKGRPAVLDGEIVAFDEAGRPSFGALQPRMHQRNPAAVAELARAVPVTFMAF
DILHLDETPTIALPYTERRELLEGALTPGFRWQVPVWFPDHAERALDSSRRLGLEGVVCK
RLSSPYRPGRRSAEWTKIKNVSAVEVVIGGWRPGGGRRSGTIGSLLLGAHDERGRLLYVG
HVGTGFTQAMLADLHQRLAPLERPDSPFAEPVPREHARDARWAEPLLVGEVQYAEVTGDG
LLRHPSWRGLRPDRSPADALTSELLPRRGDAAAG
NT seq
1005 nt
NT seq
+upstream
nt +downstream
nt
atggtgcggctgccggcctacgcgccgatgctcgcccagctcggcgccctgacctccgtc
cagggcgaggactgggccgtcgagatgaaatgggacggcgtgcgcgccctcgcgtacgtc
gaggacggcaccgtccgcctggtgtcacgcaacggcagggacatcacccccgcctacccc
gagctccagctcatggccggcgccacgaaaggccgccccgccgtgctcgacggcgagatc
gtcgccttcgacgaggccggccgccccagcttcggcgcgctccagccgcgcatgcaccag
cgcaacccggccgccgtcgccgagctggcgagggccgtgccggtgacgttcatggccttc
gacatcctgcacctggacgagacgcccaccatcgcactgccctacaccgagcggcgggag
ctgctcgaaggcgcgctcacgcccgggttccgctggcaggtgcccgtctggttccccgac
cacgccgagcgcgccctcgactcctcccggcggctcggactcgaaggggtggtgtgcaag
cggctgagctcgccgtaccggccgggccggcgcagcgcggaatggaccaagatcaagaac
gtcagcgccgtcgaggtcgtcatcggcggctggcggcccggcggcggccgccgctccggc
acgatcggctcgctgctgctcggcgcgcacgacgaacgcggccggctgctctacgtcggc
cacgtcggcaccggcttcacccaggccatgctcgccgacctgcaccagcggctcgccccc
ctggagcggccggactcgccgttcgccgaacccgtgccgcgcgagcacgcccgcgacgcc
cgctgggccgagcccctcctggtcggcgaggtccagtacgccgaggtcaccggcgacggg
ctgctgcgccacccgtcctggcgcggcctgcgccccgaccgctcccccgccgacgccctc
acctccgagctgcttccgcgccgcggcgacgccgccgccggctga
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