Nocardiopsis dassonvillei: Ndas_0258
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Entry
Ndas_0258 CDS
T01248
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nda
Nocardiopsis dassonvillei
Pathway
nda03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nda00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Ndas_0258
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nda03400
]
Ndas_0258
Enzymes [BR:
nda01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Ndas_0258
DNA repair and recombination proteins [BR:
nda03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Ndas_0258
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ADH65707
UniProt:
D7AUE9
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All DBs
Position
1:322784..323662
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AA seq
292 aa
AA seq
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MATETAKVRAGRRVVEVRRPGKPLFGEGGATKEDLARYHARIAPLMLPHVRDRPVALARF
PDGIDAQGFFVKHPSVPDWVATVETSGGRMMLCQDAAALVWCADQAAVTLHAWQSREPRL
GLPDRMVIDLDPAGDGPEAFAACRAAARDVREVLDDLGLAAYVMTSGSRGLHVRSPLRPE
ADDQEVRVLAEAVADRVAARRPEELTTEVRKAARGDRLFVDYLRNGREQLAVVPYSVRAR
PGAPIAAPLTWEDLEKVETARDLTIDLEREKCPFAGMGRHARSPRRALERLG
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggagaccgcgaaggtgcgcgcgggacggcgcgtggtggaggtgcgcaggccc
ggcaagccgctgttcggcgagggcggggcgaccaaggaggacctggcgcggtaccacgcc
cggatcgcccccctgatgctgccgcacgtgcgcgaccggccggtggccctggcgagattc
cccgacgggatcgacgcgcaggggttcttcgtcaagcacccgtcggttccggactgggtg
gccactgtggagaccagcggcggccggatgatgctgtgccaggacgcggccgcgctggtc
tggtgcgccgaccaggctgcggtcaccctgcacgcctggcagtcccgggagccgagactg
ggcctgcccgaccggatggtgatcgacctcgaccccgccggggacggccccgaggccttc
gccgcctgccgcgccgcggcgcgggacgtgcgggaggtgctcgacgacctgggcctggcc
gcctacgtgatgaccagcggctcccggggcctgcacgtgcgctcgccgctgcggcccgag
gccgacgaccaggaggtccgcgtgctggcggaggcggtcgcggaccgggtggcggcccgg
cggccggaagagctgaccaccgaggtgcgcaaagccgcgcgcggggaccggttgttcgtg
gactacctgcgcaacggccgcgaacagctcgcggtggtgccgtactcggtgcgggccagg
ccgggcgcgcccatcgcggcgcccctgacctgggaggacctggagaaggtggagactgcc
cgggacctcacgatcgacctggagcgcgagaagtgcccgttcgcggggatgggcaggcac
gcccgttccccgcgccgggccctggagcgcttgggctga
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