Nitrospira defluvii: NIDE1420
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Entry
NIDE1420 CDS
T01281
Name
(GenBank) protein of unknown function, contains NHL repeats
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
nde
Nitrospira defluvii
Brite
KEGG Orthology (KO) [BR:
nde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nde03019
]
NIDE1420
04121 Ubiquitin system [BR:
nde04121
]
NIDE1420
Enzymes [BR:
nde01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
NIDE1420
Messenger RNA biogenesis [BR:
nde03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
NIDE1420
Ubiquitin system [BR:
nde04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
NIDE1420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
SGL
DUF5128
Phytase-like
SBBP
Arylesterase
SdiA-regulated
Motif
Other DBs
NCBI-ProteinID:
CBK41169
UniProt:
B3U4K9
LinkDB
All DBs
Position
1361311..1364280
Genome browser
AA seq
989 aa
AA seq
DB search
MIKAWLLDEMFRFDRRYLTAEGSQSEWGAGDSVAEEEDLPPAPTGVAAKAGNGRVMITWD
AVPEAMYYNLYFMTTKGVQIKFSELTRPIASAEDFKTVIGVTKEKGTCIEGAQSPFMHDD
LANGTCYHYVVTVVTQKGESPESQEVMAIPAPYLIAKVIGQEGVEDGEFSSPTGIAVDKD
GNIYVADTDNHSIQKFDKDGKFLGRWGGEAGSAEGGFYYPRGLTTNSDGQVYVADTGNNR
VQRFDTDGNPMKAWGKFGFAWRGADMNKFDAPWGVTTDQDGNIYVTDTNNARIQKFKGDG
TPLLKWGRDGSFDGAFFFPRGVAVDFVGNTYVADEGNNRIQKFDTRGSFLTKWGREGSGP
GQFKAPWGVTCDALGNVYVVDQGNHRIQKFDGNGTFLCAWGNRGKTEGQLNFPSGVAVDK
EGAVYVVDSGNHRVIKYVPTDEELDRGKAERERAQAVSEYPIPRNLAIKPGDTETFLSWM
DVPGAVSYNLYFHTSANLTQEGGTKIEGVTSPYNHSGLTNDQAYYYALTAVYEDGTESGL
SDEVSATPVLIDITAPQTPYAVINHGAFMTNSPEIVVTISATDLDTGVAAYYISENPMTP
MAGTPGWVEVPPAIKFGATIPFILSPGDGQKTVIVWFKDLGNNISTPASATILVNTSGYL
CVSKWGKPGRGASLLHGGEFMAPMYGLAIDQQGSIFVVDNGNNRIQKFDRTGNFIILWGN
FGAANANFHNPTGIACDAKGDVYVVDTNNHRVQKFDGKLGGYLMKFGSRGNGEGQFNAPW
GIAIDRVRGYIYVVDSANFRVQKFDMSGEFIMSWGSFGNGDGQFYFPRGIAVDQADGTVY
VVDMGNHRVQKFDTSTNVLPQLLTKWGGSSEAGHASSPLAQEAGQLRSPWGIAVDGQGDV
YVTDTGNHRVEKFDREGNFIAQWGGFGGGDGQFNFPYGIVVDSRGSVFAVDSGNTRVQQF
MPADEGSERLQEEAEAAAELGQVDKTTRV
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaggcttggctgctcgacgaaatgtttcggtttgaccggcggtatctcacggcg
gaggggagtcaaagcgaatggggcgccggggactccgttgctgaggaggaagatctgcct
cctgcaccgacgggagtggccgccaaagccggaaatggccgggtgatgatcacctgggac
gctgtgccggaggccatgtattacaacctgtatttcatgaccaccaagggcgtgcagatt
aaattttccgaactcacccgtcccatcgccagcgcggaagattttaagaccgtcatcggt
gtgaccaaggaaaaggggacctgtatcgaaggtgcgcaatcgcccttcatgcatgacgat
ttggcaaacggaacgtgttaccactatgtcgtgaccgtggtgactcagaagggggagagt
cccgaatcccaggaagtcatggcgatcccggctccctacctcattgccaaggtcatcggg
caggagggcgtggaggacggcgagttcagttctccgaccggtattgcggtagataaggac
ggcaatatctatgttgccgacaccgataatcactctatccagaaattcgataaagacgga
aaattccttggtcgctggggcggcgaagccggcagcgcagaaggcggcttctattatccg
cgcggactgaccacgaattcggacgggcaggtgtacgtcgccgataccggcaacaatcgc
gtgcagcgcttcgacacagacggcaatcccatgaaggcctggggtaagttcgggtttgcc
tggcgcggggccgacatgaataagttcgacgctccctggggtgtgactaccgatcaggac
ggcaatatctacgtgaccgataccaacaacgcccgcattcaaaagttcaagggcgatgga
actccgttgttgaagtgggggcgagatggaagtttcgacggagcctttttcttcccgcgt
ggtgtggccgtggacttcgtcgggaatacatatgtggccgatgaagggaataatcgcatt
cagaagttcgatacccgcggaagctttttgaccaagtggggccgtgaaggaagcggtccc
ggccagttcaaagccccctggggcgtgacctgcgatgccttgggcaatgtgtacgtcgtc
gatcagggtaaccaccgcattcaaaagttcgacggaaacgggaccttcctctgtgcctgg
ggaaatcgtggaaagactgaggggcagttaaactttccctccggcgtggccgtggacaag
gaaggggcggtgtacgtcgttgatagcggtaaccatcgggtcatcaaatacgtgccgacc
gatgaagaattggaccgtggcaaggcggaacgcgaacgtgcgcaagccgtcagtgagtac
ccgattccccgcaatctggcgatcaagcccggagataccgaaacattcttgagctggatg
gatgtgccgggggcggtctcctacaatctctacttccatacctcggccaatctgactcaa
gaaggcggcaccaagatcgagggcgtcaccagtccgtacaatcactcggggttgaccaac
gatcaggcctactattacgcgctgacggcggtctatgaggacggcacggagagtggattg
tcggatgaagtgtccgctacgccggtactgatcgatatcacggctccgcagacgccctat
gcggtgatcaaccacggcgcgtttatgacgaactcacctgaaattgtcgtcacgatttca
gccaccgacctcgataccggcgtggcggcgtactacatctcagagaacccaatgaccccg
atggcgggaacgccgggctgggtcgaggtgcccccggcgatcaagttcggcgcaacgatc
cccttcattctgtctcctggggacgggcaaaagaccgtcatcgtctggttcaaagatctt
ggaaacaatatctccacgccggcgagtgcgacgattctcgtcaacacgtccggctatctt
tgtgtctccaagtggggcaagcctggtcgcggcgcctcgttgttgcacggcggcgaattc
atggccccgatgtatggtctggccattgatcaacaggggtcgatctttgttgtggacaac
ggaaacaaccgtatccagaaattcgatcgcacggggaatttcatcattctctggggaaat
ttcggcgccgccaatgcgaacttccataacccgacgggtattgcctgcgacgccaagggg
gatgtctacgtggtggatacgaacaatcaccgcgtgcagaagtttgacgggaagctgggc
ggctatttgatgaagttcggatcacgagggaacggcgaaggccagtttaatgccccatgg
ggtatcgcgatcgatcgggtgcgcggatacatctatgtcgtggacagcgccaacttcaga
gtgcagaagttcgacatgagcggagagttcatcatgtcctggggcagtttcggcaacggc
gacggtcaattttatttccctcgcgggatcgccgtagatcaggccgacggcacggtgtat
gtcgtcgatatgggcaatcaccgcgtgcagaagttcgataccagcaccaacgtgttgccg
cagttgctcaccaagtggggcggcagttcggaggccggccacgccagcagcccattggcg
caggaagccggacagttgcgctcgccttggggtattgccgtcgatggtcagggcgatgtg
tacgtcacggataccggcaaccatcgtgtcgagaagttcgaccgggagggcaattttatc
gctcagtggggcggattcggcggtggtgacggacaattcaacttcccgtacggcatcgtg
gtggattcccgggggagtgtgttcgccgttgatagcggaaacactcgggtgcagcaattc
atgccggcggatgaaggcagcgagcgtttgcaggaagaagcggaagccgctgcagagttg
ggacaggtcgataaaaccacgagagtgtag
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