Nocardioides dokdonensis: I601_2773
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Entry
I601_2773 CDS
T04431
Symbol
rhlE_2
Name
(GenBank) ATP-dependent RNA helicase RhlE
Organism
ndk
Nocardioides dokdonensis
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
MZB
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
ANH39189
UniProt:
A0A1A9GLM3
LinkDB
All DBs
Position
2893078..2898405
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AA seq
1775 aa
AA seq
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MKTTPLMLRDDLAAAYLRYIDTQYWLRNSGLSDERRALLRADGNLRSECLLEPVLPYDAT
VDLLATTAAAGISAESAEIVGRALFGDFTDPGQPVKLRAHQAEAVTSHFRSGSQAGRNVV
VTSGTGSGKTESFLLPMLLRLVEEARTWSLQPPPDLWWRDKPHPRRWRPIRKAETRIPAV
RSMILYPTNALVEDQVTRLRRAARRIGTAIPGQPIWFGRYTGVTLGTSRRPADGRGHGFA
ELVANLEEQTSEFGRLVEANVGEGDLAQFPDPRAHELLVRWDMVETPPDILVTNYSMLNA
MLMRAFENPLFSQTRAWLDASPDHVFTLVVDELHLYRGTQGSEVAMVVRNLLSRLGLSPD
SPQLRCIATSASLSAGSGGLNYLEQFFGLDSSSFHVTAGVPRALPQLSGLDRDALLAGAT
PSAGVVSQQIAAACVDPESGRARATESSLIAERLFGAPDDELKGLAAALTTLADASDLAG
TIPLRAHQFVRTMRGMWACCNPQCSGVPEAAREGRGVGMLYGIPTLSCTDCGSRVLELLY
CFSCGDASLGGHVVDRTSVDNGEPDGAAIASANVGEVASDVAPLFKRSHEDFVWFWPGQK
PVQADLKWDKVIPGSKKVASFAFAPASLDHGTGLVTDAGNTLDGWIMKVVADLGERQRIP
AVPDRCPRCDSRGFNPGEKFFAGTVRSPIRAHTSGAAQSTQLYLSQLVRSLGDNAKDSRT
IVFTDSRDDAARTAAGIGLNHYRDVIRQMTQQVLTAERPSLRGIVDRGVALETLTPAEQG
VFTSFKEAHPEALELLKKQAYVPLNDTEKLTVEASFVADDEVRVGWPELRYGICDRLVRL
GIPPGGTGPSAAVNQDGSPWWKAFAPPEPDLWVPLPLNGPRETQAAMQTEKLVQALAGGL
FGRAGRDLESVGIAYFAAPAASSGVVHDPIVRGQVLAVVIRILGIRNRWAGTDAKPSTNV
PRSVAGYLKRVAEVHGRDYDVLADDVKGLLKSAGVATDWLLDLASLSSPLALVPLGGQRW
QCDFCGFLHGHAAAGVCANVGCNRPALVELDAGAVDDEGDYYGWLSRQLPRRLAAAELTG
QTKPLSEQRRRARVFKEVLLPAPAENALTVPLDVLSVTTTMEVGVDIGSLRSTVMANMPP
QRFNYQQRVGRAGRSGQIFSYAVTVCRDRSHDDDYFRSPRRMTGDDPPQPFLDLKRVRIV
RRVVAAEVLRLAFRAVSDPPEWTVDSIHGVFGSTSSWPERRAEIAAALSSPPLGDVVDRF
CAFTGLDPIAVTAIREWLATGGLVADVDSAVARDSGLTDELSELLATYGVLPMFGFPTRV
RQLVRKRPSKLEDLDRVTVSDRPLSQAVSMFAPGAKIVRDGAVHTVAGFADWAPDFKGMK
PVDPLGPEILVGLCDQCGACIVDAVEPVCGICLAGLRIVPMHQPRGFRTTYQEVDYDGDE
DESANAGSPTISVDGDPDLDVIVRGARLSTYVQARLVQVNDNNGRLFDIGQDFGSWLATD
PELFADIKTWPPKNVVGSKQIAIGELRTTDVLTIGLDSAHAPGGLLPYSPTMMPSGLAAY
RSLAEVLRRAAKRQLDIDPQELVFGLHPQGDGSMQVFLADALDNGAGYAAEIGADHNFER
LLAETRLSLRDLWAEKAHADCNSSCLDCLRSYDNSRLHGLLDWRLALDMLDLLADEPLAL
ARWMELGRRAAEGIAVTGLISLQAGTTSDGISYLHNTSTGRSVLVGHPLWWRSEDRAVEE
QIVALDELAGMSSSVAQSDVFEALRRPIALIRRLA
NT seq
5328 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgacgcccctgatgctgcgcgacgacctggccgcggcctaccttcgctacatc
gacacccagtactggttgcggaactccgggctgtctgacgaacggcgtgccctattgcgg
gcggacgggaacctgcgaagcgagtgcctgctggagccggtgctgccctacgacgcgacc
gttgacctgctggcgacgaccgccgctgccgggatctcggccgagtcggccgagatcgtc
ggccgcgcactcttcggtgacttcaccgacccgggccagccagtcaagctgcgtgcccac
caggccgaggctgtgaccagccacttccgcagtggcagccaagcgggacgcaacgtcgtc
gtcacctctgggaccggatctggcaagaccgagagcttcttgcttccgatgctcctccgg
cttgtagaagaagccaggacctggtccctacagcccccgcccgacctgtggtggagagac
aagccgcacccgcgtcgatggcgtccgatccgcaaggcggagacccggatcccggcggtc
cgctcgatgatcttgtatccgaccaacgcgctcgtcgaggaccaggtaaccaggctccgc
cgggcggcccgccggatcggcacggcgataccgggtcagccgatctggtttggccgctac
accggcgtcaccctcggaacctcccggcgccctgcagatggacgcggccacggcttcgct
gaactggtggcgaacctcgaggagcagacatccgaattcgggcgcttggtcgaggcgaac
gtaggcgagggtgacctcgcgcagttcccggacccgagggcgcacgagctgctggtccgc
tgggacatggtggagacgccgccggacatcctggtcaccaactactcgatgctgaacgcg
atgctgatgcgggcgttcgagaacccgctgttcagccagacccgggcgtggctggatgca
tcgcccgaccacgtcttcactctcgtcgtcgacgagctccacctctaccgcgggacccag
ggtagcgaggtggcgatggttgtacgcaacctgctcagccggctggggctgtccccggat
tcaccgcagctgcggtgcattgccaccagcgcctcgctgtccgctggaagtgggggactg
aactacctcgagcagttcttcggcctggacagctcgtccttccatgtcacggctggggtt
ccgcgggcgcttccgcagctctcgggactcgatcgggacgctctactcgccggggccacc
ccctctgcgggcgtcgtctcgcagcagatcgccgcggcctgcgtggaccccgaatcgggc
cgcgccagagccaccgagtcctcgctgattgcggagcgtctgttcggggcacccgacgac
gaactgaaggggctggccgccgcgctcaccacgctagcggacgcctcggacctcgccggc
accatccctttgagggcgcaccagttcgtccgcactatgcgcgggatgtgggcatgctgc
aacccgcagtgctcgggggtcccggaagcggcccgggagggccgcggggtcggcatgctc
tacgggatcccgaccctgagctgtacggactgcggctcccgggtcctcgagctgctctac
tgcttctcctgcggggacgccagtctcggcggccacgtcgtggatcgcacgtcggtggac
aatggcgagccggacggcgcagccatcgcctcggcgaacgttggcgaggtcgcctcggac
gtcgcccctctattcaagcgctcccacgaagactttgtctggttctggccgggacagaag
cccgtccaggccgacctcaagtgggacaaggtgataccaggcagcaagaaggtagcgtcg
tttgccttcgcacccgcgagcttggaccatggcaccgggctagtcacagacgctgggaac
accctcgacggctggatcatgaaggtcgtcgccgacctcggtgagcggcagcggatcccg
gcggtcccggaccggtgcccgcggtgcgactcgcgcgggttcaacccgggggagaagttc
ttcgctgggacggtgcgcagcccgatccgcgcgcacacctcaggcgctgcccagtccacg
cagctgtacttatcgcagcttgtacggagcctcggcgacaacgccaaggactcgcgaacg
atcgtcttcaccgacagccgggacgacgccgcccgcacagccgcggggatcggactgaac
cactaccgcgacgtgattcggcagatgacccagcaagtgctcacggccgaacgtccctcc
ctgcgcgggatcgtcgaccgcggggtcgcgctagagacgctgacacccgccgagcagggg
gtgttcacctcgttcaaggaggcccacccggaggcccttgaactgctcaagaagcaggcc
tacgttccgctcaacgacaccgagaagctcacggtcgaagcatcgttcgtcgccgacgac
gaggtccgggtcggctggccagaactgcggtacgggatctgtgaccggctggtccgactt
gggatcccgcccggtggcaccggaccttcggcggctgtcaaccaggacgggagcccgtgg
tggaaggcgttcgcgccgcccgagcctgacctgtgggtgccgctgccgctgaacggccca
cgggagacgcaggctgcgatgcagactgagaagttggtgcaagcgcttgccggcggactc
ttcgggcgggcagggcgggacctggagtcggtgggcatcgcctacttcgcggcgccagcg
gcatcgtctggagtcgtccacgatcccatcgttaggggtcaggtcctggcggtcgtgatc
cggatcctcgggatccgcaaccggtgggcgggcaccgatgccaagccgtccaccaacgtg
ccgcgcagcgtggccggctacctcaagagggttgccgaggtacacggccgggactacgac
gtcctcgccgacgacgtcaaagggctgctgaagtcggccggagtcgccaccgactggctc
ctcgacctcgcctcgctgtcgtcgcctctggcactggtcccgctcgggggccagcgctgg
cagtgcgacttctgtgggttcctgcacggacacgcggcggccggtgtctgcgccaatgtc
ggctgcaaccggccggcgctcgtcgagctggatgccggcgccgttgacgatgaaggcgat
tactacggctggctctcccggcagcttccgcgtcgcctcgccgcggcagagctgaccggc
cagaccaagcccttgagcgaacagcgccggcgagctcgggtgttcaaggaagtgctgctg
ccagcgcccgccgagaacgcgctaactgtgcccttggacgtgctcagtgtgaccacgacg
atggaagtcggggtcgacatcggctcgctccggtccacggtcatggccaacatgcctccg
caacggttcaactaccaacagcgggtcggtcgggccggccggtcgggccagatcttctcg
tatgcggtcacggtgtgccgggaccgatcgcacgacgacgactacttccgctcgcctcgt
agaatgacgggtgacgaccccccgcagcccttcctcgacctcaaacgggtccggatcgtc
cgccgggtggtagctgccgaggtgctgcgactggcattccgagcagtcagcgatcctcct
gagtggaccgtcgacagcatccacggagtcttcgggtcgacctcaagctggcctgagcga
cgtgcggagatcgccgccgcgctttcctcgccccctctgggggatgtggtcgaccggttc
tgcgcgttcaccggactcgatccgattgcagtcacagcgatccgggaatggttggccacc
ggcggcctggtagccgacgtcgattctgcggtggcccgtgactccggcctgacagacgag
ctcagcgagttgctggcgacgtacggcgtgttgccgatgttcggcttcccaacccgagtg
cgccagctggtccggaagcggccgtccaaactggaggacctcgaccgcgtgacggtctcg
gatcggccactgagccaagcagtgtcgatgtttgcgccgggtgcgaagatcgttcgggac
ggcgctgtgcacactgtcgcgggcttcgcggactgggcgccggacttcaagggcatgaaa
ccggtcgacccactcggcccggagatcctggtcgggctgtgcgaccagtgtggggcctgc
atcgtggacgccgtcgagccggtgtgcgggatatgccttgccgggctgcggatcgtccca
atgcatcagccacggggtttccggaccacgtaccaagaagttgactacgacggcgacgag
gacgagtctgcgaacgcgggctcgccgacgatctcggtggacggcgacccggacctggac
gtgatcgttcgcggggcccgactcagcacctacgtccaagcacggctggtacaggtcaac
gacaacaacgggcggctgttcgatatcggccaggacttcgggtcctggctggcgaccgat
ccggagcttttcgcggacatcaagacctggcctccgaagaacgtggtcggctccaagcag
atcgcgatcggggagctgcgcactacggacgtgctgaccatcggactcgacagtgcgcac
gcgccgggagggctgctcccctactcgccgacgatgatgccgtccgggctggccgcctac
cggtcgctcgccgaggtgctccgtcgggcggcaaagcggcagctcgacatcgacccgcag
gagttggtcttcgggctgcacccacagggcgacggctcgatgcaggtattccttgccgat
gctctcgacaacggtgccgggtacgccgccgagatcggggcggaccacaacttcgagcgg
ttgctagcagagacccggttgtcgctgcgcgacctgtgggccgagaaggcgcacgcggac
tgcaactcctcatgtctggactgcctccggtcctacgacaacagccggctgcacggactc
ctggactggcgccttgccctcgacatgctggacctgctggccgacgagccgctcgctctg
gctcgatggatggagcttggccggcgcgcggccgaagggatcgctgtgaccggcctgatc
agcctgcaagccggcaccacctcagacggcatctcctacttgcacaacaccagtaccggc
cgatcggtactggtgggccacccgctgtggtggcgttcagaggaccgcgccgtcgaggaa
caaatcgtcgcgctagatgagttggccggaatgtcatcttcggtcgctcaaagcgatgtg
ttcgaggcactgcggcgcccgatcgccctgatccggcggctggcatga
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