Candidatus Nitrosotalea devanaterra: NDEV_0787
Help
Entry
NDEV_0787 CDS
T04889
Symbol
lig
Name
(GenBank) DNA ligase
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
ndv
Candidatus Nitrosotalea devanaterra
Pathway
ndv03030
DNA replication
ndv03410
Base excision repair
ndv03420
Nucleotide excision repair
ndv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ndv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NDEV_0787 (lig)
03410 Base excision repair
NDEV_0787 (lig)
03420 Nucleotide excision repair
NDEV_0787 (lig)
03430 Mismatch repair
NDEV_0787 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ndv03032
]
NDEV_0787 (lig)
03400 DNA repair and recombination proteins [BR:
ndv03400
]
NDEV_0787 (lig)
Enzymes [BR:
ndv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NDEV_0787 (lig)
6.5.1.6 DNA ligase (ATP or NAD+)
NDEV_0787 (lig)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
NDEV_0787 (lig)
DNA replication proteins [BR:
ndv03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
NDEV_0787 (lig)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
NDEV_0787 (lig)
DNA repair and recombination proteins [BR:
ndv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
NDEV_0787 (lig)
NER (nucleotide excision repair)
Other NER factors
NDEV_0787 (lig)
MMR (mismatch excision repair)
Other MMR factors
NDEV_0787 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
CUR51552
UniProt:
A0A128A2J3
LinkDB
All DBs
Position
1:complement(708733..710499)
Genome browser
AA seq
588 aa
AA seq
DB search
MKFSLVADTLSYMENTTKRLELTQHLVDLFKITPPDIIPKVVYLLQGKLRPDHEGVEIGI
AEKIAIKALSKSSGISIRKIEDEYKDTGDFGQVASKILEQKTQTTFLSENITVERVYETL
YKIAELKGARSQDMKMKYISSLLNDATPTEGGFIAKIITSNLRLGIADYTILDALSIAYT
GSKENRPALEHAYNVCSDLGKVSFAVSKNGLDALRDFQVTIFSPIRPMLAERVKSPQEAH
EKMGLEFASEYKLDGERVQVHRQGEKIVLYSRSLENITSYYPDIVENIGKALKSDEIILE
AEAVAINDDTGEFLPFQELMHRRRKYKIAQAVQEYPITVNFFDVLLVDKKSCLDLSYAER
RKLLEKNVTEDTFAKVMPMVLVKSDSEVEDSLENAINSGCEGIMLKQLDSPYRAGARANN
WLKLKREYRNELGDSLDLVVVGAFYGRGRRTGRYGALLLSAYDTEADMFPSICKVGTGFT
DESLDQFYQILADKITVKKDPRIQSGLEADVWFDPEVVIEIVASEITLSPIHKVAMDKIR
KGSGLALRFPKFTGKIRFEKTSENATNIEEILTLYNSQKRVVQDEKIN
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgaaattttcccttgttgcagatacgctaagttacatggaaaataccacaaagagatta
gagcttacacaacatctagtagatctttttaaaattacaccgccggatataataccaaaa
gttgtctacttgctccaaggaaaactacgacctgaccacgagggagtagaaattggcatt
gcagaaaagattgcaataaaagcactatcaaaatcatctggaatttcaattagaaaaatt
gaggacgagtacaaagataccggagactttgggcaagtggcatcaaagatactagagcaa
aaaacccagacaacttttttgagtgaaaacattacagtcgagcgagtctatgagacacta
tacaaaattgcagaattaaaaggcgcaaggtcacaagacatgaagatgaagtacatctca
agcctgctaaatgatgccacgccaacagagggtggatttattgcaaaaataataacatca
aatcttaggcttggaattgcagactatacaatacttgatgcgctatccattgcatatact
ggttccaaagaaaacagaccagcacttgagcacgcgtataatgtctgcagtgacttgggc
aaagtttcatttgcagtatcaaaaaatggactagacgccctaagagattttcaagttacc
atattcagcccgattcgaccaatgcttgctgaaagggtaaagagtccgcaagaggcccat
gaaaaaatgggactagagtttgcatcagagtacaagcttgacggcgagcgagtccaggtc
cacagacagggagaaaaaattgttttgtattctcgcagccttgaaaacataacaagctac
tatccagatattgtagaaaacatcggcaaggcgttaaagtctgatgaaattattttagaa
gcagaagctgttgcaataaacgatgacactggcgagtttttaccattccaggaattgatg
catcgtagacgaaaatacaaaattgcccaagcagtacaagaatatccaatcactgtaaac
ttttttgatgttttactggtggataagaaaagttgccttgacttgtcatatgcagaaaga
agaaaactgttggagaaaaacgtaacagaggatacttttgccaaagtcatgccaatggtt
ctggtaaaatcagacagcgaagttgaagacagtttggaaaatgcaataaattctggatgt
gagggaataatgctaaagcagttagactcgccatatcgtgcaggtgcaagggcaaacaac
tggctcaagctcaagcgagagtatagaaacgagcttggagacagcctcgacttggtggta
gtgggtgcattttatggaagaggtagaaggactgggaggtatggcgctttgttgctgtct
gcatatgacaccgaggcagacatgtttccaagtatttgcaaagtcggtacaggctttaca
gatgagagcctagaccagttttatcaaattcttgcagataagataactgtcaaaaaagac
cccagaatccagagtggacttgaggcagatgtgtggtttgatccagaagttgtaatagag
atagtggcatcagagataaccctcagtccaatccacaaagttgccatggacaaaatcaga
aaaggtagtggacttgcattacggtttccaaagtttacaggaaagataagatttgaaaaa
acatcggagaacgcaaccaacattgaagaaatactaactttgtataacagccaaaaacgt
gttgtgcaagacgaaaaaataaactag
DBGET
integrated database retrieval system