Neochlamydia sp. S13: NCS13_1_0446
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Entry
NCS13_1_0446 CDS
T05849
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ney
Neochlamydia sp. S13
Brite
KEGG Orthology (KO) [BR:
ney00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NCS13_1_0446
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ney03400
]
NCS13_1_0446
Enzymes [BR:
ney01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NCS13_1_0446
DNA repair and recombination proteins [BR:
ney03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NCS13_1_0446
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
Motif
Other DBs
NCBI-ProteinID:
BBI16641
UniProt:
A0A3T1C8R8
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Position
580537..581109
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AA seq
190 aa
AA seq
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MILKAYQQKKTLKKPLAPVPELSLDPSCGLPIFCIQKHAASHLHYDFRVECQGVLISWAI
PKGPSLNPYNKRLAIRVEDHPLAYRHFEGVIPPGNYGAGEVVLWDEGIYTLAGLKAKKDI
ENACLKGLEKGHLEIELYGHKLKGGFVLQQWKKEKDKNWLLIKRKDQYVDLKIDVLEHNQ
SVRTCFPNTF
NT seq
573 nt
NT seq
+upstream
nt +downstream
nt
atgatattaaaagcttatcagcaaaaaaagacattaaaaaaacctcttgcccctgtgcca
gagctatctctagacccttcttgcggtttgcccattttttgtatacaaaaacatgccgct
tctcatttacattatgattttagagtcgaatgtcaaggcgtgcttataagttgggctatc
cccaagggcccttcccttaatccttacaacaaacgcttagctattcgtgtagaagaccac
cccttagcttatcgtcattttgaaggagttatccctccagggaattatggagcaggagaa
gtggttctttgggatgaagggatttacactttagcgggattaaaggccaaaaaggatatt
gagaatgcttgcttaaaaggtttagaaaagggccacttagagatagagttgtatggccat
aaattaaaaggcggttttgtcttgcagcaatggaaaaaagagaaagataaaaattggtta
ttgattaaacgtaaagatcaatatgtggatttaaaaatagatgtgttagagcacaatcaa
tccgtgcgcacttgctttcctaacaccttttaa
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