Nocardia farcinica IFM 10152: NFA_29400
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Entry
NFA_29400 CDS
T00207
Name
(GenBank) putative ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nfa
Nocardia farcinica IFM 10152
Pathway
nfa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NFA_29400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nfa03400
]
NFA_29400
Enzymes [BR:
nfa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NFA_29400
DNA repair and recombination proteins [BR:
nfa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NFA_29400
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
DUF6459
Motif
Other DBs
NCBI-ProteinID:
BAD57787
NIH_Japan:
nfa29400
UniProt:
Q5YVK4
LinkDB
All DBs
Position
complement(3121163..3122125)
Genome browser
AA seq
320 aa
AA seq
DB search
MAPAPSPMLATAGRPPEDPRGWAFEMKWDGMRAVADAADGQCLLYSRNGKQVAGSFPEIV
EAVAAAVGPHRVVLDGEIIAPEGARGAPSFSRLQRRMHVRAPTPQLIREVPVLYMLFDLL
ALDGHATVRLPYTERRDLLARLDIARPPLQLSPSWTDVDPAELAAAATDNGLEGLVAKRL
DSVYQPGERSRAWLKMPFRRTTEAVIAGWLPGNGPFQKSFGSLVLGAHDAQGRLVHIGNV
GTGWKQSERTRLRQRLDEIARPDSPFDVPAPRPVAALAHWVSPELVADIEYREATAEGLR
HPSWRGLRIDKDPAEITWPA
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atggcgcccgcgccgtcgccgatgctggccaccgctggacgaccgccggaggatccgcgc
ggttgggctttcgagatgaaatgggacgggatgcgggcggtggccgacgccgccgacggg
cagtgcctgctctacagtcgcaacggcaagcaggtcgccggatcgttccccgagatcgtc
gaggccgtcgcggccgcggtcggcccgcaccgggtggtcctcgacggggagatcatcgcc
cccgaaggcgcccggggcgcgccgtcgttctcccggttgcagcgccgcatgcacgtgcgc
gccccgacaccgcagctcatccgcgaggtgccggtgttgtacatgctgttcgatctgctc
gcgctcgacgggcacgccaccgtgcgcctgccctacaccgagcgccgcgacctgctcgcc
cggctcgacatcgcgcgcccgccgttgcagctgtcgccgagctggaccgatgtcgacccc
gccgagctggccgcggccgccaccgacaacggcctggaagggctggtcgccaaacggctc
gattcggtgtatcagcccggggagcgcagccgcgcctggctcaagatgccgttccgcaga
acgacagaagcggtgatcgccggatggttgccgggtaacggtccgttccagaagtcgttc
gggtcactggttctcggtgcacacgatgcacaggggcggctggtgcacatcggcaacgtc
ggcaccggatggaagcagtccgagcgcacccggttacggcagcggctcgacgaaatcgcc
cgcccggactcaccgttcgacgtgcccgcgccccgcccggtcgccgcgctcgcccactgg
gtctcccccgaactcgtcgccgacatcgaataccgcgaagccaccgccgaaggactgcgc
cacccgagctggcgcgggctgcgcatcgacaaagacccggccgagatcacctggcccgcc
tga
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