Nocardia farcinica IFM 10152: NFA_6770
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Entry
NFA_6770 CDS
T00207
Name
(GenBank) putative ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nfa
Nocardia farcinica IFM 10152
Pathway
nfa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NFA_6770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nfa03400
]
NFA_6770
Enzymes [BR:
nfa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NFA_6770
DNA repair and recombination proteins [BR:
nfa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NFA_6770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
BAD55522
NIH_Japan:
nfa6770
UniProt:
Q5Z219
LinkDB
All DBs
Position
700299..702725
Genome browser
AA seq
808 aa
AA seq
DB search
MASRRAFDGGAGRPPVEVELSNLDKVLYPATGTTKGEVIAYYTAIAEAMLPHIAGRPVTR
KRWPNGVEAPSFFEKNLAEHAPPWLERRVLEHSDRRVAYPLIDSEAGLAWIGQQASLEVH
VPQWRFDGAAMGPATRIVFDLDPGPGVGLPECAEVALAVRDMIEDIGMHAFPVTSGSKGI
HLYVPLDRVLSPGGASTVAKQVATNLEKLRPDLVTATMAKAVRRGKVFLDWSQNNPAKTT
IAPYSLRGRAEPNAAAPRTWAEIEDAATLRHLRFDEVLARWRDDGDLLADLDPPLSRRGA
DALPGGADALAKYRSMRDPARTPEPVPAEPPSRGADNRFVVQEHHARRLHWDVRLERDGV
LASWAVPKGPPTTPKQNRLAVHTEDHPLEYLHFHGVIPKGEYGAGEMTIWDTGTYETEKW
RDDEVIVRFHGSKLTGRYALIQTNGNQWLMHLMREQPADAETPVGAETPVGAEDSGGPAV
DAEIRDETAGDADAAGGRRSRTTAGAEVGRRGATPVPRGLSPMLAVSGEVGPLDGEQWCF
ETKWDGFRLIAEIDAGAVTLRSRAGNVVTDRYPRIAAVLAEELAGHRAVLDGEAVVFDEH
NVAQVALLQADPARAEFVAFDVLYLDGTSLLRKRFADRRRVLEALGAAAPSLRVPPALDG
PGAEALRYSEEHGLEGVIAKRWDSVYLPGKRGHSWVKQRNWRIQPVVVGGYRRSGARDFK
SLLVGIPHDGELIYVGRVGTGFGEQDMTALARRLRGLERKTSPFANALTAEERKEAVWVR
PTITGRVRFMNWTDTGRLWHPAWLGEDD
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgcgcagagcgttcgacggcggggcgggcaggccaccggtcgaggtggagctg
agcaacctcgacaaggtcctctacccggccaccggaaccaccaagggcgaggtgatcgcc
tattacacggccatcgccgaggcgatgctgccgcacatcgccgggcgcccggtcactcgc
aagcgctggcccaacggtgtcgaggcgccgtcgttcttcgagaagaacctcgccgagcac
gcgccgccgtggctcgagcggcgggtgctcgagcattccgaccgtcgcgtcgcctacccg
ctgatcgattccgaggcggggctggcgtggatcgggcagcaggcgtcgttggaagtccat
gtgccgcaatggcgtttcgacggtgccgcgatgggcccggcgacccgcatcgtgttcgat
ctcgatccggggccgggcgtcggcctgcccgaatgcgccgaagtggcgttggccgtgcgg
gacatgatcgaggacatcggcatgcacgccttcccggtgaccagcggcagcaagggcatt
cacctctacgtgccgctggaccgggtgctgagcccgggcggcgcgtccacggtcgccaaa
caggtggcgaccaatctggagaagctgcggcccgacctggtgacggcgacgatggccaag
gcggtgcgccgcggcaaggtgttcctcgactggagccagaacaatccggccaagaccacc
atcgccccctactcgttgcgcggccgcgccgaacccaacgccgccgccccgcgcacctgg
gccgagatcgaggacgccgccaccctgcgccacctgcgcttcgacgaggtcctcgcgcgc
tggcgcgacgacggcgacctgctcgccgacctcgatccgccgctgtcgcgccgcggcgcc
gacgccttgcccggtggggccgacgcgctcgccaagtatcgctcgatgcgcgacccggcc
cgcacccccgaaccggtgcccgccgaaccgccgagccgcggcgccgacaaccgcttcgtc
gtccaggaacaccacgcccgccgcctgcactgggatgtgcggctcgaacgcgacggcgtg
ctggcctcctgggccgtgcccaaggggccgcccaccaccccgaaacagaaccgtctcgcc
gtgcacaccgaggaccatcccctcgaatacctgcacttccacggagtcatccccaagggc
gaatacggcgcgggggagatgaccatctgggacaccggcacctacgagaccgagaaatgg
cgcgacgacgaggtgatcgtgcgcttccacggcagcaagctcaccggccgctacgccctc
atccagaccaacggcaaccagtggttgatgcacctgatgcgcgagcaaccggcggacgcg
gaaacaccggtgggcgcggaaaccccggtgggcgcggaggattcgggcgggccggcggtc
gacgccgagatacgcgacgaaacagcaggcgacgccgacgcggccgggggacggcgatcg
cgcacgacggccggtgccgaggtaggccgccgcggcgctacgccggtgccgcgcggtctt
tcgccgatgctggcggtctccggtgaggtcgggccgctcgacggcgagcagtggtgtttc
gagacgaagtgggacgggttccggctgatcgccgaaatcgacgccggcgcggtgacgctg
cgcagccgggcgggcaacgtcgtcaccgaccggtacccgcggatcgccgcggtgctcgcc
gaggaactggccgggcaccgggcggtgctcgacggcgaggcggtggtgttcgacgaacac
aacgtcgcgcaggtcgccctgctgcaagccgacccggcccgcgccgagttcgtcgccttc
gatgtgctctacctggacgggacctccctgctgcgcaagcgtttcgccgaccggcggcgg
gtgctggaggcgctcggcgcggccgcaccgtcgctgcgggtgccgcccgccctcgacggc
cccggcgccgaggccctgcgctacagcgaggaacacggcctcgaaggcgtcatcgcgaaa
cgctgggactcggtctatctgcccggcaagcgcggccactcctgggtgaaacagcgcaac
tggcgaatccagcccgtcgtcgtcggcggataccggcgcagcggcgcccgcgacttcaaa
tccctgctcgtcggcatcccgcacgacggcgaactcatctatgtcggccgggtcggcacc
ggattcggcgaacaggacatgaccgccctggcgcgcaggctgcgcggcctggaacgcaag
accagccccttcgccaacgcactcaccgccgaggaacgcaaggaggcggtgtgggtgcgc
ccgacgatcaccggccgggtgcgattcatgaactggaccgacaccggacggctctggcac
cccgcctggctcggcgaagacgactga
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