Nocardia farcinica NCTC11134: ERS450000_00026
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Entry
ERS450000_00026 CDS
T04524
Name
(GenBank) Putative ribonuclease J Rv2752c
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
nfr
Nocardia farcinica NCTC11134
Pathway
nfr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ERS450000_00026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfr03019
]
ERS450000_00026
Messenger RNA biogenesis [BR:
nfr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ERS450000_00026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Motif
Other DBs
NCBI-ProteinID:
CRY73223
UniProt:
A0A0H5NC85
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All DBs
Position
1:21918..23999
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AA seq
693 aa
AA seq
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MTTPRRPRRTASRPAGAPDPAEQRRAAEAAAERAESARPAEPAAEPAAEPAADRPGGSAG
EPTAPAGTDQPTAPAKAERPARGDRGDARTQRQDKPARGDSGEGRSAGGRRSGRGGRQGR
GRAEQLPAQPPVVAAQDRLGAPPKLPKNGLRVFALGGIGEIGRNMTVFEYGGKLLIVDCG
VLFPEDQQPGVDLILPDFRPIEDRMDDIVAIVLTHGHEDHIGAVPFLLRNRSDIPVLGAK
FTLALVAAKCREHRLHPKLIEVTEGETTSHGPFECEYFAVNHSIPDALAVAIRTPAGVAL
HTGDIKLDQLPLDGRLTDLAGFSRLGDEGVDLFLVDSTNAEVPGFVTPEREIGGVLDTVI
GKARGRVIVASFASHVHRIQQVVDVAQKYGRRVCFVGRSMVRNMQIAQDLGYLTVPDGVV
VDLDVAATLPGDRLVLISTGSQGEPLSALSRMARGDHRQINIRPDDLVVLASSLIPGNEN
SVFAVVNGLARLGASVITQQNAKVHVSGHASAGELLYLYNAVRPTNAMPVHGEWRHLRAN
AALAVATGVPEERVVLAEDGVVVDLVDGIASIVGRVPVGHVYVDGLSVGDVGESTLSDRL
VLGEGGFISITVAIDETTGKAVSAPELSGRGFSDDPTALAEAAELVEAELLRLAGEGITD
THRIAQGVRRVVGRWVADTYRRRPMIVPTVIGV
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgaccacaccgcgccgtccccgccgcacggcgagccgccccgcgggcgcgcccgacccg
gccgaacaacgccgcgccgccgaagccgccgccgagcgtgcggagtcggcacggcccgcg
gaaccggccgccgaacccgccgcggaaccggccgccgaccggcccggcgggagcgccggt
gagcccaccgctccggcgggcaccgaccagcccaccgccccggccaaggccgagcggccg
gcccgtggcgaccggggcgacgcccgtacccagcgtcaggacaagcccgcccgcggcgac
tccggtgagggccgctccgcgggtggccgccgctccggccgtggcggcaggcagggccgc
ggccgcgccgagcagttgcccgcgcagccgccggtggtcgcggcacaggatcggctcggc
gccccgccgaagctgcccaagaacggcctgcgggtgttcgcactcggcggtatcggcgaa
atcggccgcaacatgacggttttcgagtacggcggcaagctgctgatcgtcgactgtggc
gtgttgttccccgaggaccagcagcccggtgtggacctgatcctgcccgacttccggccc
atcgaggaccggatggacgacatcgtcgcgatcgtgctcacccacggccacgaagaccac
atcggcgcggtgccgttcctgctgcgcaaccgctccgacattccggtgctcggcgcgaag
ttcactctcgcgttggtcgcggccaagtgccgcgaacaccggctgcacccgaagctgatc
gaggtgaccgagggcgagaccacctcgcacggccccttcgaatgcgagtacttcgccgtc
aaccactccatcccggacgcgctggccgtcgccatccgcaccccggcgggcgtcgcgctg
cacaccggtgacatcaagctcgaccagctgccgctggacgggcgcctcaccgatctggcc
gggttctcccgcctgggcgacgaaggcgtcgacctgttcctggtcgactccaccaacgcc
gaggtgccgggcttcgtcacccccgaacgcgagatcggcggcgtcctggacacggtgatc
ggcaaggcccgtggccgggtgatcgtggcgtcgttcgccagccatgtgcaccgcatccag
caggtcgtggacgtggctcagaagtacgggcgccgggtgtgtttcgtgggccgctcgatg
gtgcgcaacatgcagatcgcccaggatctcgggtacttgacggtgcccgacggcgtggtc
gtcgacctcgatgtcgccgcgaccctgcccggcgaccgcctggtgctgatctcgaccggg
tcccagggggagccgctgtcggcgctgtcgcggatggcgcgcggcgaccaccgccagatc
aacatccgccccgacgacctggtggtgctggcgtcctcgctgatcccgggcaacgagaac
tcggtgttcgcggtcgtcaacgggctggcacggctcggcgcctcggtcatcacccagcag
aacgccaaggtgcacgtctccgggcacgcctcggcgggcgagctgctctacctgtacaac
gcggtgcggccgacgaacgcgatgccggtgcacggcgagtggcggcacctgcgggccaac
gcggcgctggccgtcgcgaccggggtgcccgaggagcgggtggtgctcgccgaggacggg
gtggtcgtcgacctggtggacgggatcgcctcgatcgtgggccgcgtgccggtcggccac
gtctacgtcgacgggctctcggtgggcgatgtcggcgagtcgacgctgtccgaccgcctc
gtgctgggcgagggcggtttcatctcgatcaccgtcgccatcgacgagacgaccggaaag
gccgtcagcgcaccggaattgagtggtcgcgggttctccgacgacccgaccgcactggcc
gaggccgccgaactcgtggaggccgaactgctgcgtttggccggggaaggcatcaccgac
acccaccgcatcgcccagggtgtgcgccgcgtggtcgggcgctgggtggccgacacctac
cggcgccgtccgatgatcgtgcccaccgtcatcggggtctga
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