KEGG   Nothobranchius furzeri (turquoise killifish): 107383457Help
Entry
107383457         CDS       T05163                                 

Gene name
lig1
Definition
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
nfu  Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03030  DNA replication
nfu03410  Base excision repair
nfu03420  Nucleotide excision repair
nfu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nfu00001]
 Genetic Information Processing
  Replication and repair
   03030 DNA replication
    107383457 (lig1)
   03410 Base excision repair
    107383457 (lig1)
   03420 Nucleotide excision repair
    107383457 (lig1)
   03430 Mismatch repair
    107383457 (lig1)
Enzymes [BR:nfu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     107383457 (lig1)
    6.5.1.6  DNA ligase (ATP or NAD+)
     107383457 (lig1)
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     107383457 (lig1)
DNA replication proteins [BR:nfu03032]
 Eukaryotic Type
  DNA Replication Elongation Factors
   Other elongation factors
    107383457 (lig1)
 Prokaryotic Type
   Elongation factors (archaeal)
    Other elongation factors
     107383457 (lig1)
DNA repair and recombination proteins [BR:nfu03400]
 Eukaryotic Type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     107383457 (lig1)
   NER (nucleotide excision repair)
    Other NER factors
     107383457 (lig1)
   MMR (mismatch exicision repair)
    Other MMR factors
     107383457 (lig1)
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Motif
Other DBs
NCBI-GeneID: 107383457
NCBI-ProteinID: XP_015811562
UniProt: A0A1A7ZQQ2
LinkDB All DBs
Position
sgr09
AA seq 1002 aa AA seqDB search
MQRSIASFFQPKSKDKDNLTKHADEAAKKPVKSPLKVQNGVQEADSPIKKVAKRSRQILD
SDEDEATVVKEQAATKEHEDKEAKSEKSDHVLKEVSTPLSPPAATQSPVTPATPASSTSS
GSPSTPSSISPSGIIKRKTARKMFPKRKLDESGSGGESRKEESKVTEEQGQQNKRPRVES
CVSSAGNTDEPMEEGAEEERVEKAATEANSPDEEVENKKKEEAEKAKKEEEQVKKRSSDE
REKKAEEAEKKTGAKEKTDDEKGPTVAKEEVVEKDTQDTGSPKSQKQKEVKEQKDKEPAK
KAPISSFFAPRKAAAKTEKTETNEGEKKMERKSSEEERKDRKSESTSEQTDYDPSRPNYH
PVEHACWKQGQKVPYLAVARTFEKIEQDSGRLRNIETLSNLLRSVLLLSPDDLLCCVYLC
LNQLGPAYLGMELGVGEMVLMKAVAQATGRQLDKIKSEAQEKGDLGLVAESSRSNQRMMF
QPASLTAGGVFRKLKEIASMSGNSAMNKKIDIIKGLFVACRFSEARYIVRSLAGKLRIGL
AEQSVLSALSQAVCLTPPGQGFPPAVIDAGKGMSAESRRAWIEEKSLILKQIYCEMPNYD
VIIPVLLKEGIDQLPNHCKLTPGIPLRPMLAHPTKGVGEVMKRFDEAAFTCEYKYDGERA
QIHILEGGEVRIFSRNQEDNTSKYPDIVSRIPKVKKDSVVSCVLDSEAVAWDREKKQIQP
FQVLTTRKRKDVDASEIKVQVCVYAFDLLYLNGESLVRQPLCRRRALLRESFSEMEGEFQ
FARFIDSDNTDIIAEFLEQSVRDSCEGLMVKTLEKDATYEIAKRSHNWLKLKKDYLDGVG
DTVDLCVIGAYLGKGKRTGTYGGFLLACYDEENEEFQSVCKIGTGFKDEDLEQHHKFLKE
HILPKPRPYYRVDQSAEPDVWLDAVQVWEVKCADLSLSPVYKAAMGTVDPEKGISLRFPR
FLRIRDDKKPEDATSGAQIADLYKKQQQILNQRDKADPEDYY
NT seq 3009 nt NT seq  +upstreamnt  +downstreamnt
atgcagcggagcattgcatcatttttccagcccaagagcaaagacaaggacaatctgacg
aaacatgcagatgaagcagcaaagaagcccgtcaagagtcccctcaaggtgcagaacggt
gtccaggaagctgattcgcccatcaagaaggttgccaaacgcagccgtcaaatcctggac
agcgatgaggacgaggccacagtcgttaaagaacaagctgccaccaaagaacacgaagac
aaagaagcgaaatcagagaagagtgaccatgtgttgaaggaggtttccacccccctgtct
ccaccagctgcaactcagtcccccgttaccccggcaaccccagcctcttcaacatcctct
gggtctcccagcacccccagttccatctctccatctggaatcatcaaacgcaaaactgcg
aggaagatgttccccaagaggaagctggatgagagcgggagcggcggagagagtcggaaa
gaggagtccaaggtcaccgaggagcagggtcagcaaaacaaacgaccccgtgtggagagc
tgtgtcagcagcgcagggaacaccgatgaacccatggaggagggagcagaggaagaaagg
gttgaaaaggcagcgactgaggctaacagcccagatgaggaggtggagaacaaaaagaaa
gaagaagcagagaaggccaagaaggaggaggagcaggtgaagaaaaggagctctgatgag
agagaaaagaaagctgaggaggcggaaaagaaaactggagcgaaggagaagactgatgat
gagaaagggcccactgtcgccaaagaggaggtggttgaaaaggacacgcaagacacgggg
agcccgaaaagtcaaaagcagaaggaggtgaaggagcagaaagataaggagcctgccaaa
aaagccccaatcagcagtttctttgctcccaggaaagctgcagcgaagacagaaaaaact
gagacgaatgaaggagagaagaagatggagaggaagagctcagaggaggagcgcaaagac
agaaaaagtgagtccacctcagaacaaacggactatgatccatccaggccaaactaccat
ccggtagaacacgcctgctggaaacaaggccagaaagtgccgtacttggcagtggctcgc
acctttgagaaaattgaacaggactctggcaggctgagaaacatcgagacgctgtcaaac
ctgcttcgctctgttctgctgctctctccagatgacctcctgtgctgtgtgtacctgtgc
ttgaaccagctgggccccgcctacctcgggatggagcttggtgtaggagaaatggtgctg
atgaaagccgttgctcaagcaactgggcgacagttggacaaaattaaatccgaggcgcag
gagaaaggagatttgggccttgtggccgagagttcccgtagcaaccaacgcatgatgttc
caaccggccagcctgactgcagggggtgtgttcaggaaattgaaggaaattgccagcatg
agtgggaactcggccatgaataagaaaatcgacatcatcaaaggcctctttgtggcatgc
cgcttttcagaggcccgctacatagtcaggtctcttgctgggaagctgaggattggcctt
gctgagcagagcgtgctttctgccctgagccaagctgtctgtctgactccgcctggacaa
ggtttccctcctgctgtgattgacgcagggaaaggcatgagcgctgaaagcaggcgggcc
tggatcgaagagaagagcctcattctaaagcaaatatactgcgagatgcccaattacgac
gtcatcattcctgttttgctaaaagaaggcatcgaccagctgcccaatcactgcaagctt
actccaggcataccgctgagacccatgttggctcatcccaccaagggtgtcggggaggtg
atgaagaggtttgacgaggcagcgttcacctgcgagtataaatacgatggggaacgtgca
cagattcacattcttgagggtggtgaagttcggatattcagccgcaaccaggaagacaac
accagcaaataccccgatatcgtctctcgcattcccaaggtaaagaaggactctgtggta
tcttgtgtcctggactctgaggcggtggcctgggaccgtgaaaagaaacagatccaaccc
ttccaagtcctcaccactcgtaagaggaaggatgtggatgcctcagagatcaaagtccaa
gtgtgcgtgtatgcctttgacctcctctatctcaatggagagtccctggtgcgtcaaccg
ctgtgtcggcgtcgggcgctgctgagagaaagcttctcagagatggaaggagagtttcag
ttcgcccgtttcatcgactctgacaacaccgatatcattgcagagttcctagagcagtct
gtccgagactcttgtgaaggcctgatggtgaagactttggagaaggatgctacctacgag
attgccaagcgttctcataattggctcaagctaaagaaagattacctggacggagtgggc
gacaccgtggacctgtgtgtgatcggcgcctatctggggaaaggaaaaaggaccggcact
tacggagggttcctgctggcctgctatgatgaagaaaatgaagagtttcagtcggtctgc
aagatcgggacaggctttaaggatgaagatctggagcagcatcacaagtttttaaaggag
cacatccttcccaagccacgcccctactaccgtgtggaccaatcggccgagcctgacgtg
tggctggatgccgtgcaggtttgggaggtgaagtgcgccgacctctcgctgtcgcctgtc
tacaaggctgccatgggaacggtggatccagagaaaggaatttctctcaggttcccgcgc
ttccttcggattagagatgacaagaagccagaggacgccacaagcggagctcagatcgct
gatttgtacaagaagcagcagcagattctgaaccagagagacaaagctgacccggaggac
tactactga

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