Nothobranchius furzeri (turquoise killifish): 107387680
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Entry
107387680 CDS
T05163
Name
(RefSeq) collagen alpha-1(I) chain-like
KO
K06236
collagen type I alpha
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu04510
Focal adhesion
nfu04512
ECM-receptor interaction
nfu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107387680
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
107387680
09142 Cell motility
04820 Cytoskeleton in muscle cells
107387680
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nfu00536
]
107387680
Glycosaminoglycan binding proteins [BR:
nfu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107387680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
TILa
Motif
Other DBs
NCBI-GeneID:
107387680
NCBI-ProteinID:
XP_015818276
UniProt:
A0A8C6W0P7
LinkDB
All DBs
Position
sgr12:16044424..16064140
Genome browser
AA seq
1453 aa
AA seq
DB search
MFSFVDIRLALLLCATVLLARGQGEDDSLLTECKSEGQVYNDKDVWKPEPCQICLCDKGF
VLCDEVICEDTTECEDPFIPDGECCPVCPDDNGPQFPDDNTDTGSETVKGPTGPRGDPGL
PGYPGNDGIPGQPGLPGPPGPPGPPGLGGNFSPQMSYVDHSKSSGPAVPGPMGPMGARGP
PGPAGYSGPQGMPGPAGEPGEPGATGPMGPRGPVGPPGKNGDDGEPGKAGRPGERGAAGP
QGARGFPGTPGLPGLKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGIPGALGLRGLPGE
RGRPGPSGPAGARGNDGNTGPAGPPGPTGPAGPAGFPGSAGAKGETGPAGGRGSEGPQGA
RGEPGNPGPAGPAGAAGAPGADGQPGAKGSNGAAGIAGASGFPGARGPAGAQGGAGAPGP
KGNNGDPGPSGPKGEAGAKGEPGPAGIQGLPGPSGEEGKRGPRGEPGGAGPRGPPGERGA
PGARGFPGADGGAGGKGAPGERGATGPTGSQGATGESGSPGSPGVPGSKGVTGSPGSPGP
DGKVGPGGAPGQDGRPGPPGPAGSRGQPGIMGFPGPKGTAGDSGKPGERGPAGAAGSVGA
PGKDGDLGAPGPSGPAGPAGEKGEQGPAGAPGFQGLPGPQGATGETGKPGEQGVPGEAGP
PGPAGARGDRGFPGERGAPGQAGPTGPRGAPGPSGNDGAKGEPGAAGAPGGVGPAGMQGM
PGERGAGGLPGAKGERGDGGPKGADGAAGKDGLRGMSGPIGVPGPSGAQGEKGEAGPAGI
AGPTGPRGAPGERGETGPAGPAGFAGPPGADGQPGAKGESGDSGPKGDAGPPGPAGPVGA
PGPQGPAGPTGAKGARGGVGAPGATGFPGATGRVGPPGPSGAAGPPGPAGPVGKDGPRGN
RGETGPAGRPGEAGAAGAPGPAGEKGSPGSDGAPGAPGIPGPQGIAGQRGIVGLPGQRGE
RGHSGLAGGAGEPGKQGPSGPVGERGPPGPAGPPGLSGAPGEAGREGSPGHEGAPGRDGA
PGPKGDRGESGMAGPPGPPGAPGAPGAVGPSGKTGDRGESGPAGPAGPAGIAGPRGPAGP
AGGKGDRGETGEAGERGHKGHRGLSGQPGLPGPSGPAGERGPAGASGPAGPRGPSGSNGS
PGKDGVNGMPGPIGPPGPRGRNGEMGPAGPPGPPGPAGAPGAPGGGFDFVSPPLQEKAPD
PLRGGYRADDPNMMQNRDMEVDTTLKTLTQKVEKIRSPDGSEKSPARTCRDLKMCHPEWK
SGMYWVDPNQGSPLDAIKVHCNMETGETCIYPSESIPMKNWYLSKNIREKKHVWFSESMT
GGFQLHYGSSESDPEDVSIQISFMRLMSNQASQNVTYHCKNSIAYMDSATGNLKKALLLQ
GSNDVEIRAEGNSRFTYSVSEDGCTSHTGTWGKTVIDYKTTKTSRLPIIDIAPMDVGAPD
QEFGVEVGPVCFL
NT seq
4362 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggatattcggttagcgcttttgctctgcgcaactgtgcttttggca
agaggtcaaggcgaggatgatagcttattaactgagtgcaaatcagagggacaggtgtac
aatgacaaggatgtatggaaaccagaaccctgccagatctgcctgtgtgacaaagggttt
gtcttgtgcgacgaggtgatctgcgaagacacaaccgagtgtgaagaccccttcattcca
gatggagagtgctgccctgtctgccctgatgataatgggcctcagttcccagatgacaac
accgacacaggctcagagacagtaaagggacccactggccccagaggagatccgggtctt
cctggttaccccggcaacgatggaatccctggacaacctggcctccccggccctcccggt
cctcctggcccccctggccttggcggaaacttctctcctcaaatgagctacgtcgaccac
tcaaagtccagcggccccgctgttcctggcccaatgggccccatgggtgcccgtggtccc
cctggacctgctggatactctggtcctcagggaatgcctggtcctgctggagagcctggt
gagcctggagctactggccccatgggtcctcgtggtccagttggtcctcctggaaagaac
ggagatgatggtgaacctggcaaggctggacgcccaggtgagcgcggagctgctggccct
cagggtgctcgtggattccctggaactccaggacttcctggcttgaagggacacagagga
ttcagcggtctggatggagccaagggagacgctggacctgcaggtcccaagggagaaccc
ggctcccctggtgagaacggcatccctggagccttgggtcttcgtggccttcctggtgag
agaggccgccccggaccttctggccctgctggtgctcgtggtaacgatggcaacactggt
cctgctggtcctcctggacccactgggcctgctgggccagctggattcccaggcagtgct
ggtgctaagggtgagactggtcctgctggaggccgtggatctgagggaccccagggagcc
cgtggtgagcctggtaacccaggacctgctgggcctgctggagctgctggtgctcctgga
gcggatggtcagcctggtgctaagggctctaatggtgctgctggtattgctggtgcatct
ggtttccccggtgctcgtggtcctgctggagctcagggaggtgctggtgctcctggtccc
aagggtaacaatggtgatcctggtccttcaggtcctaagggagaggctggtgccaagggt
gagcctggtcctgctggaattcaaggacttcctggtccctctggtgaggagggaaagaga
ggaccccgtggagagcctggtggtgctggaccccgtggaccccccggagagcgtggtgct
cctggtgctcgtggtttccctggtgctgatggaggtgcaggtggaaagggagccccaggt
gagcgtggtgctactggacccacaggatctcaaggagccactggcgagtctggaagccct
ggttctcctggcgttcccggatccaagggtgtgactggtagcccaggaagccctggccct
gatggcaaagttggacctggtggtgctcctggacaagatggccgccctggacctcctggc
ccagctggatccagaggtcagcctggtatcatgggattccccggtcccaagggaaccgct
ggtgatagtggtaagcctggtgagagaggacctgctggtgctgctggctctgttggtgct
cctggtaaagacggtgatcttggtgctcctggaccttctggccctgctggacctgctgga
gagaagggagaacagggacctgctggtgctcctggattccagggtcttcctggaccacaa
ggagctactggtgagactggaaagcctggtgagcagggtgttcccggtgaagctggacct
cctggaccagctggagccagaggtgacagaggtttccctggtgagcgcggtgctcctggc
caagctggtccaactggacctcgtggtgctcctggaccttctggtaacgatggagccaag
ggagagcctggtgccgctggtgcccctggtggtgttggaccagctggtatgcaggggatg
cccggtgagcgtggagctggtggtctgccaggcgccaagggtgaaagaggagatggtggt
ccgaagggagctgatggcgccgccggcaaagatggccttcgtggtatgagtggtcctatt
ggagttcctggaccttctggtgctcagggtgagaagggtgaagctggtcctgctggaatc
gctgggcccactggtcctcgtggagccccaggtgagcgtggagaaactggacctgctgga
cctgctggttttgctgggccccctggtgctgatggtcagcctggtgccaagggagagtct
ggagattctggacccaagggagatgctggtcctcctggacctgctggacctgttggagct
cctggtcctcagggacctgctggtcctactggagccaagggagctcgtggtggtgttgga
gcacctggtgctactggtttccctggagccactggcagagttggaccccctggtccttct
ggagctgctggaccacctggacccgccggacccgttggaaaggatggacctagaggaaac
cgtggtgagactggtcctgctggtcgccctggtgaggctggtgctgctggagcccctgga
cctgctggtgagaagggatcccctggctctgatggagcccctggtgccccaggtatccct
ggaccccaaggtattgctggacagcgtggtattgtaggtctccctggacagcgtggagag
cgtggtcactctggtcttgctggaggagctggcgagcctggaaagcagggtccttctggc
cccgttggtgagcgtggaccccctggacctgctggaccccctggcctgtctggtgctcct
ggagaggctggtcgtgagggatctcctggtcatgagggtgcccctggtcgtgatggagct
cctggacccaagggagaccgtggtgagagtggcatggctggaccccctggacctcctggt
gcacctggtgcccccggagccgttggcccctctggcaagactggtgaccgtggagagtct
ggtcctgctggtcctgctggtcctgctggcatcgctggaccccgtggtccagctggtcct
gctggaggtaagggagacagaggagagacaggtgaggctggagagagaggccacaaggga
cacagaggactcagtggtcagcctggtctgcctggaccatctggacctgctggagagaga
ggacccgctggtgcttccggaccagccggaccaagaggaccatctggaagcaacggttcc
cctggtaaagatggtgttaatggaatgcctggacccattggaccccctggacctcgtggt
cgcaatggagagatgggacccgctggacctcctggacctcccggacccgctggagctcct
ggtgctcccggtggtggatttgacttcgtcagcccacccttgcaggagaaggctcccgat
cctctccgtgggggttaccgcgctgatgatcccaacatgatgcaaaatcgtgacatggag
gttgacaccactctgaagaccttgactcagaaggtcgagaagatccgcagccctgatggt
tcagagaagagccccgcccgcacatgccgagacctgaagatgtgccaccctgagtggaag
agcggcatgtactgggttgatcccaaccagggctctcctctggacgccatcaaggtccac
tgcaacatggagactggtgagacttgcatctaccccagcgagtccatccccatgaagaac
tggtacctcagcaagaacatcagagagaagaagcacgtctggttcagcgagtccatgact
ggcggattccagttacattatggcagcagcgaatctgatcccgaggatgtcagcatccag
atttccttcatgcgcctgatgtccaaccaggcctcacagaacgttacatatcactgcaag
aacagcattgcctacatggattctgcaaccggcaacctgaagaaggccctgcttcttcag
ggctccaacgatgtcgagatcagagctgagggcaacagccgcttcacatacagtgtcagc
gaggatggctgcacgtcacacactggcacatggggcaagacagtcatcgactacaagaca
acaaaaacatcccgactgcccatcattgacattgctcctatggatgttggtgcacctgat
caggaatttggcgtcgaagttggccctgtttgcttcttgtaa
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